PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.3G163100.1.p
Common NameMYB10, PRUPE_ppa026640mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 240aa    MW: 27939.4 Da    PI: 7.8255
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.3G163100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.65.3e-171057148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT eEd+ll ++++ +G g W+ ++++ g++R++k+c++rw +yl
  Prupe.3G163100.1.p 10 KGAWTREEDDLLRQCIENHGEGKWHQVPNKAGLNRCRKSCRLRWMNYL 57
                        79********************************************97 PP
2Myb_DNA-binding45.71.5e-1463106146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg + ++E +l+++++k+lG++ W++Ia +++ gRt++++k++w++
  Prupe.3G163100.1.p  63 RGEFAEDEVDLIIRLHKLLGNR-WSLIAGRLP-GRTANDVKNYWNT 106
                         78999*****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.7E-23560IPR009057Homeodomain-like
PROSITE profilePS5129425.072561IPR017930Myb domain
SuperFamilySSF466891.72E-287104IPR009057Homeodomain-like
SMARTSM007171.4E-14959IPR001005SANT/Myb domain
PfamPF002498.5E-161057IPR001005SANT/Myb domain
CDDcd001675.83E-101257No hitNo description
Gene3DG3DSA:1.10.10.601.3E-2261110IPR009057Homeodomain-like
PROSITE profilePS5129419.19362112IPR017930Myb domain
SMARTSM007172.9E-1462110IPR001005SANT/Myb domain
PfamPF002493.1E-1363106IPR001005SANT/Myb domain
CDDcd001674.23E-965108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MEGYNLGVRK GAWTREEDDL LRQCIENHGE GKWHQVPNKA GLNRCRKSCR LRWMNYLKPN  60
IKRGEFAEDE VDLIIRLHKL LGNRWSLIAG RLPGRTANDV KNYWNTRLRT DSRLKKVKDK  120
PQETIKTIVI RPQPRSFIKS SNCLSSKEPI LDHIQTVENF STPSQTSPST KNGNDWWETF  180
LDDEDVFERA TCYGLALEEE EFTSFWVDDM PQSKRQCTNV SEEGLGRGDF SFNVDFWNH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-21101097105B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Function -- GeneRIF ? help Back to Top
  1. Studies indicate that MYB10.1/2/3 MYB10.1 (ppa026640m), MYB10.2 (ppa016711m) and MYB10.3 (ppa020385m) forms a cluster on the same genomic fragment.
    [PMID: 24827911]
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00213DAPTransfer from AT1G66370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.3G163100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9364920.0GU936492.1 Prunus persica cultivar Jiaozhou blood flesh R2R3 MYB transcription factor 10 (MYB10) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007216530.11e-179transcription factor MYB75
SwissprotQ9FNV95e-61MY113_ARATH; Transcription factor MYB113
TrEMBLH6S2W71e-178H6S2W7_PRUPE; R2R3 MYB transcription factor 10
STRINGEMJ177291e-179(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.12e-63myb domain protein 113
Publications ? help Back to Top
  1. Rahim MA,Busatto N,Trainotti L
    Regulation of anthocyanin biosynthesis in peach fruits.
    Planta, 2014. 240(5): p. 913-29
    [PMID:24827911]
  2. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  3. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]