PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.3G163300.1.p
Common NamePRUPE_ppa020385mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 246aa    MW: 28211.4 Da    PI: 6.0595
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.3G163300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.42.2e-151056147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        +g+WT+eEd ll ++ + +G g W+ ++ + g++R++k+c++rw++y
  Prupe.3G163300.1.p 10 KGAWTKEEDALLSKCMENHGEGKWHEVPYKAGLNRCRKSCRLRWLNY 56
                        79********************************************9 PP
2Myb_DNA-binding45.12.3e-1463106146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg +T++E +l+++++k+lG++ W++Ia +++ gRt + +k++w++
  Prupe.3G163300.1.p  63 RGEFTEDEVDLIIRLHKLLGNR-WALIAGRLP-GRTSNGVKNYWNT 106
                         899*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.513557IPR017930Myb domain
SuperFamilySSF466891.42E-277104IPR009057Homeodomain-like
SMARTSM007175.5E-13959IPR001005SANT/Myb domain
PfamPF002493.8E-141056IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-211164IPR009057Homeodomain-like
CDDcd001671.63E-81257No hitNo description
PROSITE profilePS5129423.19558112IPR017930Myb domain
SMARTSM007177.2E-1362110IPR001005SANT/Myb domain
PfamPF002494.6E-1363106IPR001005SANT/Myb domain
CDDcd001675.69E-965106No hitNo description
Gene3DG3DSA:1.10.10.607.1E-2165109IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MGGNNLDVKK GAWTKEEDAL LSKCMENHGE GKWHEVPYKA GLNRCRKSCR LRWLNYVKPN  60
IKRGEFTEDE VDLIIRLHKL LGNRWALIAG RLPGRTSNGV KNYWNTRRRT NSLLKTTTKE  120
KFQETIKPIV TRPQPRSFTK SSNCSSFEEP VLDHTQLEEN FSTPSQTSPS TRIGNDWWDT  180
FLDDKDATET ATGSGPGFDE ELLTSFWVDD DMPQSARTCI NFSEEELSIS DFSFNLDLWN  240
HSKEE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-2271064102B-MYB
1h8a_C2e-22510922125MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Function -- GeneRIF ? help Back to Top
  1. Studies indicate that MYB10.1/2/3 MYB10.1 (ppa026640m), MYB10.2 (ppa016711m) and MYB10.3 (ppa020385m) forms a cluster on the same genomic fragment.
    [PMID: 24827911]
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.3G163300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7722830.0KP772283.1 Prunus cerasifera MYB10.3 transcription factor (MYB10.3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007216350.10.0transcription factor MYB113
SwissprotQ9FNV91e-57MY113_ARATH; Transcription factor MYB113
TrEMBLA0A0K1TPF10.0A0A0K1TPF1_9ROSA; MYB10.3 transcription factor
TrEMBLM5WV610.0M5WV61_PRUPE; Uncharacterized protein
STRINGEMJ175490.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.15e-60myb domain protein 113
Publications ? help Back to Top
  1. Rahim MA,Busatto N,Trainotti L
    Regulation of anthocyanin biosynthesis in peach fruits.
    Planta, 2014. 240(5): p. 913-29
    [PMID:24827911]
  2. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  3. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]