PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.3G197300.1.p

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

NF-YB

Protein Properties

Length: 138aa MW: 15048.9 Da PI: 5.8276

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.3G197300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	140.7	3.8e-44	25	111	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 reqdrflPianvsrimkk+lPanakiskdaketv fvt+easdkcqrekrktin+ddllwa++tl fe+y+eplkvyl+kyre Prupe.3G197300.1.p 25 REQDRFLPIANVSRIMKKALPANAKISKDAKETV---------FVTGEASDKCQREKRKTINSDDLLWAMTTLRFEEYMEPLKVYLHKYRE 106 89****************************98.........9******************************************* PP NF-YB 93 legek 97 legek Prupe.3G197300.1.p 107 LEGEK 111 *97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.7E-39	19	121	IPR009072	Histone-fold
SuperFamily	SSF47113	5.83E-31	27	119	IPR009072	Histone-fold
Pfam	PF00808	9.6E-16	30	85	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.9E-12	49	67	No hit	No description
PRINTS	PR00615	1.9E-12	68	86	No hit	No description
PRINTS	PR00615	1.9E-12	87	105	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 138 aa Download sequence Send to blast
MADSDNDSGG NNDGSHAQSR ELSAREQDRF LPIANVSRIM KKALPANAKI SKDAKETVFV 60 TGEASDKCQR EKRKTINSDD LLWAMTTLRF EEYMEPLKVY LHKYRELEGE KTIMGGRDKD 120 SAGGGGGGLP VEVAVTV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	2e-38	14	106	1	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269\|PubMed:11250072}.

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.3G197300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021805914.1	4e-74	nuclear transcription factor Y subunit B-3
Swissprot	O23310	1e-62	NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBL	A0A251Q2N9	4e-97	A0A251Q2N9_PRUPE; Uncharacterized protein
STRING	XP_008229927.1	2e-71	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF591	34	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	2e-58	nuclear factor Y, subunit B3

Link Out ? help Back to Top
Phytozome	Prupe.3G197300.1.p

Publications ? help Back to Top
Han X, et al. Overexpression of the poplar NF-YB7 transcription factor confers drought tolerance and improves water-use efficiency in Arabidopsis. J. Exp. Bot., 2013. 64(14): p. 4589-601 [PMID:24006421] Hwang YH, et al. Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time. Plant Cell Rep., 2016. 35(4): p. 857-65 [PMID:26754793] Hossain MA, et al. Identification of Novel Components of the Unfolded Protein Response in Arabidopsis. Front Plant Sci, 2016. 7: p. 650 [PMID:27242851] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]