PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.3G209200.2.p
Common NamePRUPE_ppa005469mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 420aa    MW: 45460.7 Da    PI: 8.0549
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.3G209200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.58e-123460127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                        ++++ C +++rtG C yG++C+F+H++
  Prupe.3G209200.2.p 34 PGEPDCIYYLRTGLCGYGSNCRFNHPK 60
                        5789*********************96 PP
2zf-CCCH38.61.8e-1278102327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         ++ C +f++tGtCkyG++CkF+H++
  Prupe.3G209200.2.p  78 QPDCGYFLKTGTCKYGSTCKFHHPR 102
                         789********************96 PP
3zf-CCCH38.22.4e-12125147527
                         --SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                          C++++rtG Ck+G+ CkF+H++
  Prupe.3G209200.2.p 125 SCPYYMRTGSCKFGPACKFHHPQ 147
                         6********************97 PP
4zf-CCCH36.21e-11263288227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++Cr+f+ tGtCkyG  Ck++H++
  Prupe.3G209200.2.p 263 DQPECRYFMSTGTCKYGIDCKYHHPK 288
                         689*********************96 PP
5zf-CCCH33.66.7e-11305331127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +++++C+++  +G+CkyG++C+F H++
  Prupe.3G209200.2.p 305 PGQPPCSYYIMYGICKYGPTCRFDHPF 331
                         5899*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003566.4E-63360IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.5263361IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-93560IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.03E-53860IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-43958IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.79375103IPR000571Zinc finger, CCCH-type
SMARTSM003567.9E-675102IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-1078102IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-679104IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-581102IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.01E-6119148IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.371121148IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-5122147IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-10124147IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-5125146IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.685261289IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5261288IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-9263288IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-6264289IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-5267288IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.549304332IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-5304331IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-7306331IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5308333IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MVSENSSEAF WRLTINDNQD GGGVAQSNPY PDRPGEPDCI YYLRTGLCGY GSNCRFNHPK  60
YGSQGAQYNG ELPERVGQPD CGYFLKTGTC KYGSTCKFHH PRDRRGAGPV VFNILGLPMH  120
QEEKSCPYYM RTGSCKFGPA CKFHHPQPQS LGTVLPAFGA AGSTVLPSSG LPYAGGLSAW  180
SFPRAPYLSG PRLQSPHSYM PVVLPPQGIV PAHGWNTYVG NISPVTSTGI LGSNLTYNSR  240
TRGESAANGQ VHLSSSSLPH RPDQPECRYF MSTGTCKYGI DCKYHHPKER IAESATHPLG  300
LPSRPGQPPC SYYIMYGICK YGPTCRFDHP FVEHSAGYNF GMNALPLDSS LLSYPRSWSV  360
AHGLETSPSI SSKFPDGAKK PVNNKYENSD TKTAEDSPEQ AGSVPPSPTS SEPVQDQSG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.3G209200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007215353.10.0zinc finger CCCH domain-containing protein 3
TrEMBLA0A251Q4I40.0A0A251Q4I4_PRUPE; Uncharacterized protein
STRINGEMJ165520.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-113C3H family protein