PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.3G220100.2.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 372aa    MW: 42561.5 Da    PI: 9.9894
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.3G220100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.58.5e-07731127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                        +kt+lC  ++r G C + ++C+FaHg+
  Prupe.3G220100.2.p  7 FKTKLCVLYQR-GRCAR-ESCSFAHGQ 31
                        69*********.*****.*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902297.46E-5436IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.7E-10536IPR000571Zinc finger, CCCH-type
SMARTSM003560.0048631IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.54632IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MVERKLFKTK LCVLYQRGRC ARESCSFAHG QAELRRFSGS FDGRRDSGGD DLRDKLERRY  60
SPRGRYSPQR DARGRHVLRA EHSPSRSLER ENFEYSFGNS KRRKKQHLDG QSDISGSLRI  120
SNETEHEAKE ANSRGVLEEQ LKQLQSEINM LDHRRSQLGV YLEEKSQEVD SLTSKIKELE  180
AQLYKEKEDC KRISSKVKKF VKAHSRNSRI QDQLKRSQVR LNKLGDQLAL DIYGNDVNEE  240
DSSINIVSDG DGETTGFPVT PHNERLNDAS PSKMRLEAIR DYAKESKQSA HSTRGHLTTS  300
SRPKKLSRWN IHPAQSNFDK KNEAVSNTTG SPKQLANEGK HDRRKTASSS ILSADMVHLF  360
YFLEEFCLIS M*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.3G220100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020414946.10.0zinc finger CCCH domain-containing protein 13 isoform X1
TrEMBLA0A251Q3Y60.0A0A251Q3Y6_PRUPE; Uncharacterized protein
STRINGEMJ166180.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.16e-44C3H family protein