PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.3G227900.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 254aa    MW: 28781.7 Da    PI: 5.1676
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.3G227900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.31e-141461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+W++eEd+ l  +++++G  +W++ ++  g  R++k+c++rw +yl
  Prupe.3G227900.1.p 14 KGAWSPEEDDTLRAYIEEHGHLNWRSLPKFAGISRCGKSCRLRWTNYL 61
                        79******************************99************97 PP
2Myb_DNA-binding52.41.2e-1667110146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+ T+ Ed+l++++++++G++ W+ Ia +++ gRt++++k++w++
  Prupe.3G227900.1.p  67 RGNYTQAEDDLILKLHEEFGNK-WSMIATKLP-GRTDNEIKNHWNT 110
                         899*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.256961IPR017930Myb domain
SuperFamilySSF466891.32E-3011108IPR009057Homeodomain-like
SMARTSM007175.4E-141363IPR001005SANT/Myb domain
PfamPF002495.9E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-221568IPR009057Homeodomain-like
CDDcd001671.24E-101661No hitNo description
PROSITE profilePS5129424.45862116IPR017930Myb domain
SMARTSM007178.8E-1666114IPR001005SANT/Myb domain
PfamPF002491.4E-1467110IPR001005SANT/Myb domain
CDDcd001672.01E-1169110No hitNo description
Gene3DG3DSA:1.10.10.603.2E-2569114IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MVRAPFYDKS GLKKGAWSPE EDDTLRAYIE EHGHLNWRSL PKFAGISRCG KSCRLRWTNY  60
LRPGVKRGNY TQAEDDLILK LHEEFGNKWS MIATKLPGRT DNEIKNHWNT RFKKLTEQNP  120
TSSQSAKEQP CNHESSPTVT SQNTELGAQS GPKFDASVHQ ILESSPLSPE TFSSDSSSLS  180
SNQASASTSM SWFNESTGDF WTEPFQLNVQ SNYSVNYLRE EEVLSSPSLT FYDIGDNMDL  240
FYQVMPTWPE NID*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-251211425126MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed at low level. Highly expressed in siliques. Weakly expressed in seedlings, young and mature leaves, cauline leaves, stems, flower buds and roots. {ECO:0000269|PubMed:9839469}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.3G227900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007216491.20.0myb-related protein 308
SwissprotQ9SZP15e-53MYB4_ARATH; Transcription repressor MYB4
TrEMBLA0A251Q4880.0A0A251Q488_PRUPE; Uncharacterized protein
STRINGXP_008230194.11e-161(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.16e-55myb domain protein 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Schenke D,Cai D,Scheel D
    Suppression of UV-B stress responses by flg22 is regulated at the chromatin level via histone modification.
    Plant Cell Environ., 2014. 37(7): p. 1716-21
    [PMID:24450952]
  3. Zhou M, et al.
    Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
    Plant J., 2015. 84(2): p. 395-403
    [PMID:26332741]
  4. Zhang J, et al.
    Soybean SPX1 is an important component of the response to phosphate deficiency for phosphorus homeostasis.
    Plant Sci., 2016. 248: p. 82-91
    [PMID:27181950]
  5. Zhou M, et al.
    LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
    Plant Physiol., 2017. 174(3): p. 1348-1358
    [PMID:28483877]
  6. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]
  7. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]