PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.3G262100.1.p
Common NamePRUPE_ppa003809mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family WRKY
Protein Properties Length: 548aa    MW: 59711 Da    PI: 7.5336
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.3G262100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1048.3e-33256312259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         dD ynWrKYGqK+vkgse+prsYY+Ct+ +Cpvkkkvers  +++++ei+Y+g+Hnhe
  Prupe.3G262100.1.p 256 DDSYNWRKYGQKQVKGSEYPRSYYKCTHLNCPVKKKVERSP-NGEITEIIYKGQHNHE 312
                         8****************************************.***************8 PP
2WRKY106.61.3e-33433491159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+vkg+++prsYY+Ct+agC+v+k+ver+++dpk+v++tYeg+Hnh+
  Prupe.3G262100.1.p 433 LDDGYRWRKYGQKVVKGNPHPRSYYKCTYAGCNVRKHVERASTDPKAVITTYEGKHNHD 491
                         59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-28247314IPR003657WRKY domain
PROSITE profilePS5081123.789250314IPR003657WRKY domain
SuperFamilySSF1182908.5E-26251314IPR003657WRKY domain
SMARTSM007744.0E-36255313IPR003657WRKY domain
PfamPF031068.0E-25256312IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.4E-37418493IPR003657WRKY domain
SuperFamilySSF1182909.42E-30425493IPR003657WRKY domain
PROSITE profilePS5081138.503428493IPR003657WRKY domain
SMARTSM007749.0E-40433492IPR003657WRKY domain
PfamPF031061.8E-26434491IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0031347Biological Processregulation of defense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MTEKEKRCLL DIASMAKNQD SERVSVSAPP QPQRPVITLP PRPSAESLFS GGSGASPGPM  60
TLVSSFFPDT YPDSEYRSFS QLLAGAMGSP MGSTRPIQFN ENPVDGSAQL EGGSENGGEN  120
KSGFKQSRPM NLMVARSPLF TVPPGLSPSG LLNSPGFFSP PSPFGISHQQ ALAQVTAQAA  180
LAQSRMHMQA EYQPSSVGAP TEPQAYHPSV MPNEASQQQT LPSTSDHRSS AGQSSEASHS  240
DRKYQPSSVA TDRPADDSYN WRKYGQKQVK GSEYPRSYYK CTHLNCPVKK KVERSPNGEI  300
TEIIYKGQHN HEAPQPKRGK DGGDLNGHLH SQPRPENGLQ RLVGDSNGSS ENIASHSMLE  360
RHQESTQAAP GQLPGASDSE ELRDGEIREE GDADEPNPKR RNIDVGPSEV ALSHKTVTEP  420
KIIVQTRSEV DLLDDGYRWR KYGQKVVKGN PHPRSYYKCT YAGCNVRKHV ERASTDPKAV  480
ITTYEGKHNH DVPAARNSSH NTANNNASQL KPLTVVAENH PLLKGGEFGN NDQRPVLLQL  540
KEEQIFV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-39256494878Probable WRKY transcription factor 4
2lex_A1e-39256494878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.3G262100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN6757080.0JN675708.1 Prunus salicina WRKY domain class transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007215541.10.0probable WRKY transcription factor 4
SwissprotQ9XI901e-147WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLM5XCC40.0M5XCC4_PRUPE; Uncharacterized protein
STRINGEMJ167400.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154534100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-129WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]