PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.3G271400.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family AP2
Protein Properties Length: 404aa    MW: 45370.1 Da    PI: 7.7295
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.3G271400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.52.5e-1170126155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+++GV++++++gr++A+++d  s+n   k+k  + g ++ +e Aa+a++ a++k++g
  Prupe.3G271400.1.p  70 SRFRGVSRHRWTGRFEAHLWDkLSWNVtqKKKGKQ-GAYDEEESAARAYDLAALKYWG 126
                         789******************88887784446666.9*******************98 PP
2AP252.31.4e-16169220155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  Prupe.3G271400.1.p 169 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 220
                         89****99**********99966...3.6*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.5E-970126IPR001471AP2/ERF domain
CDDcd000182.00E-1570133No hitNo description
SuperFamilySSF541711.7E-1370135IPR016177DNA-binding domain
PROSITE profilePS5103217.25371134IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.4E-1171133IPR001471AP2/ERF domain
SMARTSM003803.0E-1671140IPR001471AP2/ERF domain
PRINTSPR003672.9E-57283IPR001471AP2/ERF domain
PfamPF008475.0E-12169220IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-18169230IPR016177DNA-binding domain
CDDcd000189.79E-25169230No hitNo description
Gene3DG3DSA:3.30.730.103.1E-18170229IPR001471AP2/ERF domain
SMARTSM003801.6E-26170234IPR001471AP2/ERF domain
PROSITE profilePS5103218.953170228IPR001471AP2/ERF domain
PRINTSPR003672.9E-5210230IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MELMMVKNEE NPGRRRLSTA DRETQATRSV KRRRRDPATV AVSRDNNQSE QQLPQKPADP  60
TSATTMKRSS RFRGVSRHRW TGRFEAHLWD KLSWNVTQKK KGKQGAYDEE ESAARAYDLA  120
ALKYWGTSTF TNFLISDYEK EIEIMQTVSK EEYLASLRRR SSGFSRGVSK YRGVARHHHN  180
GRWEARIGRV FGNKYLYLGT YSTQEEAARA YDIAAIEYRG INAVTNFDLS SYIRWLKPTA  240
DDPITTQEPE TVAEPPNMPF MANSYIPTGE SFSHTNPFAS DYLNSAREQE VIGSNIPLNT  300
GSKSSSPTAL GLLLQSSIFR ELVQKNSNFS EDESTDGEET KNQPQVGSDD EFGGIFYDGI  360
GNNPFACSSN SVGDNNPWSS ITSTILLNQP TKANASDSLF FFS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11334RRRLSTADRETQATRSVKRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.3G271400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020416181.10.0AP2-like ethylene-responsive transcription factor At1g79700
TrEMBLA0A251Q6790.0A0A251Q679_PRUPE; Uncharacterized protein
STRINGXP_008230978.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21983283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.33e-78AP2 family protein