PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.3G300500.1.p
Common NamePRUPE_ppa005942mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family Trihelix
Protein Properties Length: 437aa    MW: 48416 Da    PI: 5.6593
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.3G300500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix80.32.7e-25108190286
            trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         W ++e++ Li +rre++  ++++k++ +lW+++s+kmre+gf rsp++C++kw+nl k++kk +++ k +   +s +++y+++l+
  Prupe.3G300500.1.p 108 WVQEETRSLIGFRREVDGLFNTSKSNRHLWDQISAKMREKGFDRSPTMCTDKWRNLLKEFKKARHQVKVG--SRSAKMSYYEDLQ 190
                         ********************************************************************98..45568*****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.281100164IPR017877Myb-like domain
SMARTSM007170.0096104166IPR001005SANT/Myb domain
CDDcd122031.21E-27106171No hitNo description
PfamPF138371.3E-18107191No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MYLSEKARPV DLYKGGGLGG EEESEREMMM EVVVVANGSA PPHHHHQNQS ESQHQQQMHQ  60
MIVGIGENNS SGGEGEEQEL CAATSNSIGS RAAGGGGAGA PKKRAETWVQ EETRSLIGFR  120
REVDGLFNTS KSNRHLWDQI SAKMREKGFD RSPTMCTDKW RNLLKEFKKA RHQVKVGSRS  180
AKMSYYEDLQ DLLRDRTNNN HNAASTDAAA ASAAAYKSPT PPKLESFVRF CDKGLEDSGI  240
PFGPMEATDR SALNLERQLD HDGDPLAITA ADTVAVSGVP PWNWREGPGN GGEGHSSYCG  300
KIITVKLGEY TRRIGIDGTA DAIKEAIKSA FRIRTKRAFW LEDEDQVVRS LDRDMPLGNY  360
TLHLDEGITI KLCLYDDSDR IVPTEEITLY TEDDFRDFLA RRGLMGLREL SGYRRIDTLD  420
ELQSGAMYQG VRLLGD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A3e-43102188186DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.3G300500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007215404.10.0trihelix transcription factor GT-4
SwissprotQ9FX531e-153TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBLM5X4Z80.0M5X4Z8_PRUPE; Uncharacterized protein
STRINGEMJ166030.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68173248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.11e-147Trihelix family protein
Publications ? help Back to Top
  1. Le Gourrierec J,Li YF,Zhou DX
    Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex.
    Plant J., 1999. 18(6): p. 663-8
    [PMID:10417717]