PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.3G307800.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 237aa    MW: 26925.6 Da    PI: 8.3204
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.3G307800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF854.4e-27959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        kri++k++rqvtfskRr g++KKA ELSvLC +ev +iifs +g+lye++s
  Prupe.3G307800.1.p  9 KRIDDKIRRQVTFSKRRSGLIKKARELSVLCSVEVGLIIFSAKGRLYEFCS 59
                        79***********************************************96 PP
2K-box33.81.4e-1212419628100
               K-box  28 ienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                         +++L++ q  l  +++e+L++ eL qLe+qL++ l++ Rs+K++l+++++  l +kek+lqee+  ++k+++e
  Prupe.3G307800.1.p 124 NRSLKTIQSELEAQNIENLDVTELTQLEKQLDTLLRQTRSRKTQLMMDSLTALIEKEKQLQEEKLLMEKEIAE 196
                         7889999999999**************************************************9998888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.137161IPR002100Transcription factor, MADS-box
SMARTSM004321.9E-34160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-26267IPR002100Transcription factor, MADS-box
CDDcd002651.42E-33267No hitNo description
PRINTSPR004044.8E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.8E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS512979.241110200IPR002487Transcription factor, K-box
PfamPF014865.6E-10125194IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MGRGKVQLKR IDDKIRRQVT FSKRRSGLIK KARELSVLCS VEVGLIIFSA KGRLYEFCSG  60
ERFQLVELNT LHKEEKNLVL FANLGKVLER YQIHNDEENA APKSGGGTGK KNPSEWNGLC  120
AGPNRSLKTI QSELEAQNIE NLDVTELTQL EKQLDTLLRQ TRSRKTQLMM DSLTALIEKE  180
KQLQEEKLLM EKEIAELKEQ KNKEQAEEAD QQSCSANNNN NSDDNAPPRQ TMLHLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-16161161Myocyte-specific enhancer factor 2B
1tqe_Q2e-16161161Myocyte-specific enhancer factor 2B
1tqe_R2e-16161161Myocyte-specific enhancer factor 2B
1tqe_S2e-16161161Myocyte-specific enhancer factor 2B
5f28_A2e-16177181MEF2C
5f28_B2e-16177181MEF2C
5f28_C2e-16177181MEF2C
5f28_D2e-16177181MEF2C
6bz1_A2e-16186190MEF2 CHIMERA
6bz1_B2e-16186190MEF2 CHIMERA
6bz1_C2e-16186190MEF2 CHIMERA
6bz1_D2e-16186190MEF2 CHIMERA
6c9l_A2e-16161161Myocyte-specific enhancer factor 2B
6c9l_B2e-16161161Myocyte-specific enhancer factor 2B
6c9l_C2e-16161161Myocyte-specific enhancer factor 2B
6c9l_D2e-16161161Myocyte-specific enhancer factor 2B
6c9l_E2e-16161161Myocyte-specific enhancer factor 2B
6c9l_F2e-16161161Myocyte-specific enhancer factor 2B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.3G307800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM2433700.0KM243370.1 Prunus pseudocerasus CAULIFLOWER A-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020414816.11e-139truncated transcription factor CAULIFLOWER A isoform X2
TrEMBLA0A251Q9941e-171A0A251Q994_PRUPE; Uncharacterized protein
STRINGXP_008231097.11e-152(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1577822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65050.26e-34AGAMOUS-like 31