PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.3G308100.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family SBP
Protein Properties Length: 427aa    MW: 47050.2 Da    PI: 7.8103
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.3G308100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP126.11.4e-39152228278
                         -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         C vegC+adls ++eyhrrh+vCe hsk+pvv v+g+++rfCqqCsrfh+l efDe krsCr+rL++hn+rrrk+++
  Prupe.3G308100.1.p 152 CLVEGCKADLSLCREYHRRHRVCELHSKTPVVSVRGEQKRFCQQCSRFHSLVEFDEVKRSCRKRLNGHNQRRRKPKP 228
                         **************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.9E-31145213IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.017149226IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.75E-36151231IPR004333Transcription factor, SBP-box
PfamPF031105.4E-29152225IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MCFSSSLPKP CLCVSLSSLG KEEIREEGRV VVVVVMEWDF KDFACWDSTD ELELELELEL  60
ELEQQKLEQD SDLAALVGSI SQPQKKKRSA AAGSLLVDLN LSDSPPAGHL FKDPIKPSAV  120
ASSSSPLSSP SSSSSSSKRV KSNGTDEQKL SCLVEGCKAD LSLCREYHRR HRVCELHSKT  180
PVVSVRGEQK RFCQQCSRFH SLVEFDEVKR SCRKRLNGHN QRRRKPKPES LYFTSNFLSG  240
YKGPRILQFS NPQLCATNNV RSMWPVEAKN GAESMLYSRH PSFNGGEKPF LFLQTNNDTK  300
AASGNRAAPQ TFLRHQPFPT TAASPAESRK GSHIMSSDGM TRVIDSGCAL YLLSSHPAQA  360
SVTQSNVTTT HPGQLLDSRL QKNGSFAEFS CSHDAEDKAA NPEMMFLMGP DGFLDNGVQM  420
LPILLE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-251522251184squamosa promoter binding protein-like 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.3G308100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020415132.10.0squamosa promoter-binding-like protein 13A isoform X1
TrEMBLA0A251Q8640.0A0A251Q864_PRUPE; Uncharacterized protein
STRINGXP_008231095.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100312640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.12e-45SBP family protein