PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.3G308100.2.p
Common NamePRUPE_ppa007202mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family SBP
Protein Properties Length: 392aa    MW: 43286.7 Da    PI: 7.9051
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.3G308100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP126.31.2e-39117193278
                         -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         C vegC+adls ++eyhrrh+vCe hsk+pvv v+g+++rfCqqCsrfh+l efDe krsCr+rL++hn+rrrk+++
  Prupe.3G308100.2.p 117 CLVEGCKADLSLCREYHRRHRVCELHSKTPVVSVRGEQKRFCQQCSRFHSLVEFDEVKRSCRKRLNGHNQRRRKPKP 193
                         **************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.3E-31110178IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.017114191IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.35E-36116196IPR004333Transcription factor, SBP-box
PfamPF031104.7E-29117190IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MEWDFKDFAC WDSTDELELE LELELELEQQ KLEQDSDLAA LVGSISQPQK KKRSAAAGSL  60
LVDLNLSDSP PAGHLFKDPI KPSAVASSSS PLSSPSSSSS SSKRVKSNGT DEQKLSCLVE  120
GCKADLSLCR EYHRRHRVCE LHSKTPVVSV RGEQKRFCQQ CSRFHSLVEF DEVKRSCRKR  180
LNGHNQRRRK PKPESLYFTS NFLSGYKGPR ILQFSNPQLC ATNNVRSMWP VEAKNGAESM  240
LYSRHPSFNG GEKPFLFLQT NNDTKAASGN RAAPQTFLRH QPFPTTAASP AESRKGSHIM  300
SSDGMTRVID SGCALYLLSS HPAQASVTQS NVTTTHPGQL LDSRLQKNGS FAEFSCSHDA  360
EDKAANPEMM FLMGPDGFLD NGVQMLPILL E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-251171901184squamosa promoter binding protein-like 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.3G308100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020415133.10.0squamosa promoter-binding-like protein 13A isoform X2
TrEMBLA0A251Q8220.0A0A251Q822_PRUPE; Uncharacterized protein
STRINGXP_008231095.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.19e-46SBP family protein