PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G004200.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family NF-YB
Protein Properties Length: 255aa    MW: 29775.9 Da    PI: 9.1915
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G004200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB106.81.4e-331071841397
               NF-YB  13 vsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                         ++ +mkk lP+nakiskdaketvq        f t+eas kc+rekrktingddllwa++ lGf++yveplk+yl+k+re+egek
  Prupe.4G004200.1.p 107 LQTMMKKGLPGNAKISKDAKETVQY-------FTTGEASGKCRREKRKTINGDDLLWAMTRLGFKEYVEPLKIYLHKFREMEGEK 184
                         6789*******************94.......99*************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008089.8E-10106158IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471135.82E-23107189IPR009072Histone-fold
Gene3DG3DSA:1.10.20.104.6E-29108207IPR009072Histone-fold
PRINTSPR006155.4E-9141159No hitNo description
PRINTSPR006155.4E-9160178No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MDHQKKRGYR PKWATTKFKC EINLIFLFFY THSLWMDHGI IDVWLVPCNY EMKLKGCSSP  60
PPPHQIIYIS LTRTTTREQE EEEEEEKRIT QDLHHPQRDS TTGFYRLQTM MKKGLPGNAK  120
ISKDAKETVQ YFTTGEASGK CRREKRKTIN GDDLLWAMTR LGFKEYVEPL KIYLHKFREM  180
EGEKTAGTGM ARQLLYADHH PHEYHDQRQR EQLQHLHAPG MNMYGGMMMG HQRHHQGQGH  240
HPYLYGSGSG PSSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A4e-241101792197NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.4G004200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotO233102e-36NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBLA0A251PDQ10.0A0A251PDQ1_PRUPE; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.15e-38nuclear factor Y, subunit B3
Publications ? help Back to Top
  1. Han X, et al.
    Overexpression of the poplar NF-YB7 transcription factor confers drought tolerance and improves water-use efficiency in Arabidopsis.
    J. Exp. Bot., 2013. 64(14): p. 4589-601
    [PMID:24006421]
  2. Hwang YH, et al.
    Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time.
    Plant Cell Rep., 2016. 35(4): p. 857-65
    [PMID:26754793]
  3. Hossain MA, et al.
    Identification of Novel Components of the Unfolded Protein Response in Arabidopsis.
    Front Plant Sci, 2016. 7: p. 650
    [PMID:27242851]
  4. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]