 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Prupe.4G007500.1.p |
| Common Name | PRUPE_ppa003910mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
|
| Family |
GRAS |
| Protein Properties |
Length: 541aa MW: 60455.4 Da PI: 6.2388 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Prupe.4G007500.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 423.4 | 1.9e-129 | 171 | 540 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92
+++L++cA+a++++dl a+ l++ l +++s +g+p+qRl ay++e+L+arl rs+s++yk+l+++ + +e +++++++++++P+ +
Prupe.4G007500.1.p 171 KDVLIHCARAIAEDDLPTANGLMEVLGQMVSVSGEPIQRLGAYMLEGLRARLERSGSSIYKTLKCEVPT---GAELMSYMSVLFQICPYWR 258
789*****************************************************************9...9****************** PP
GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl 181
f+++ aN I ea+e+e r+HiiDf+i qG QW++L+q La +p+gpp++RiTgv++++s + l+ +g+rL+++A++ +vpfefn
Prupe.4G007500.1.p 259 FAYMSANVVIREALENEPRIHIIDFQIAQGSQWVPLIQDLARQPGGPPRIRITGVDDSQSAhaRGGGLHIVGQRLSQLANSWNVPFEFNN- 348
*********************************************************9988889999***********************. PP
GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272
+a + ++ele+Lr++pgEa+aVn+ + lh+++desvs++++rd++L+lvkslsPkv+++veqe+++n+++++ rf+e +eyy+a+f+s++
Prupe.4G007500.1.p 349 AAMSGCEVELENLRIQPGEAIAVNFPYVLHHMPDESVSTQNHRDRLLRLVKSLSPKVMTLVEQESNTNTSPLFSRFVEMVEYYTAMFESID 439
89999************************************************************************************** PP
GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363
+ pr++++ri+ E ++++r+ivn+vacegaer+erhe l+kW++rl++ GF+p+pls k+++ +++ll++++++ yr++e +g+l+lgWk
Prupe.4G007500.1.p 440 VARPRDDKQRISAEMHCVARDIVNMVACEGAERVERHELLGKWKSRLMMDGFTPYPLSPKVTEAIRSLLKEFNGN-YRLQEANGALYLGWK 529
*************************************************************************77.*************** PP
GRAS 364 drpLvsvSaWr 374
+r+Lv+ SaWr
Prupe.4G007500.1.p 530 QRALVTSSAWR 540
**********8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 541 aa
Download sequence Send
to blast |
MQTSQKHRST ASIHRLYHHQ PMQDIDPSIF QILENSVCSD TGSQGNNVSF QTYKEEYFTL 60
ESSPATTGFV ACDSPSAGSG LSNRSPFSSQ GSQSCLSDQR HSPDNTSGSP ISGCSVADDG 120
NGLRYKLREL EISLLGPESD IIVDSHYCCY KSDMPRWNRN QMAEMTNLNL KDVLIHCARA 180
IAEDDLPTAN GLMEVLGQMV SVSGEPIQRL GAYMLEGLRA RLERSGSSIY KTLKCEVPTG 240
AELMSYMSVL FQICPYWRFA YMSANVVIRE ALENEPRIHI IDFQIAQGSQ WVPLIQDLAR 300
QPGGPPRIRI TGVDDSQSAH ARGGGLHIVG QRLSQLANSW NVPFEFNNAA MSGCEVELEN 360
LRIQPGEAIA VNFPYVLHHM PDESVSTQNH RDRLLRLVKS LSPKVMTLVE QESNTNTSPL 420
FSRFVEMVEY YTAMFESIDV ARPRDDKQRI SAEMHCVARD IVNMVACEGA ERVERHELLG 480
KWKSRLMMDG FTPYPLSPKV TEAIRSLLKE FNGNYRLQEA NGALYLGWKQ RALVTSSAWR 540
*
|
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: During development, higher expression levels are detected in young rosette leaves, senescing leaves and petals and sepals at flower stage 15. {ECO:0000269|PubMed:16680434}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots, hypocotyls, cotyledons, shoot apex, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:16680434, ECO:0000269|PubMed:18500650}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}. |
