PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.4G040900.1.p

Common Name

PRUPE_ppa007314mg

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

NAC

Protein Properties

Length: 374aa MW: 41068.5 Da PI: 8.8603

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.4G040900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	171.2	3.3e-53	16	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+ Prupe.4G040900.1.p 16 LPPGFRFHPTDEELVVHYLKKKAASAPLPV-TIIAEVDLYKFDPWELPSKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKP 105 79**************************.89***********8888999******************************** PP NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +l++ ++++vg+kk Lvfy g+ pkg k++W+mheyrl Prupe.4G040900.1.p 106 ILTSiGNQKVGVKKALVFYGGKPPKGIKSNWIMHEYRL 143 9989999***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-64	9	176	IPR003441	NAC domain
PROSITE profile	PS51005	62.051	16	176	IPR003441	NAC domain
Pfam	PF02365	8.9E-28	17	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
MESTDSSSGS QAHPQLPPGF RFHPTDEELV VHYLKKKAAS APLPVTIIAE VDLYKFDPWE 60 LPSKATFGEQ EWYFFSPRDR KYPNGARPNR AATSGYWKAT GTDKPILTSI GNQKVGVKKA 120 LVFYGGKPPK GIKSNWIMHE YRLVNNNNNF SKPPDASNKK ASLRLDDWVL CRIYKKNNAQ 180 RPMMDEDSSN NSMDGMFAHP SSILPAPPPP PPQPKHTTNY TALLENDDHE GFFEGILSSN 240 DQQGSHSHHH HQHHQHHQHH HDQFGGISTS SSKSNLPVKR PLSSSFWNDA GSMGTAAAAA 300 TTSSSSKRFH ADLNSGISAT AAGGVDESNS SFVSMLNQLP QGTAPFHSNA LLGSLGDGVL 360 RQQFQHPSMN WNS*

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

MESTDSSSGS QAHPQLPPGF RFHPTDEELV VHYLKKKAAS APLPVTIIAE VDLYKFDPWE  60
LPSKATFGEQ EWYFFSPRDR KYPNGARPNR AATSGYWKAT GTDKPILTSI GNQKVGVKKA  120
LVFYGGKPPK GIKSNWIMHE YRLVNNNNNF SKPPDASNKK ASLRLDDWVL CRIYKKNNAQ  180
RPMMDEDSSN NSMDGMFAHP SSILPAPPPP PPQPKHTTNY TALLENDDHE GFFEGILSSN  240
DQQGSHSHHH HQHHQHHQHH HDQFGGISTS SSKSNLPVKR PLSSSFWNDA GSMGTAAAAA  300
TTSSSSKRFH ADLNSGISAT AAGGVDESNS SFVSMLNQLP QGTAPFHSNA LLGSLGDGVL  360
RQQFQHPSMN WNS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-75	16	179	17	168	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-75	16	179	17	168	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-75	16	179	17	168	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-75	16	179	17	168	NO APICAL MERISTEM PROTEIN
3swm_A	2e-75	16	179	20	171	NAC domain-containing protein 19
3swm_B	2e-75	16	179	20	171	NAC domain-containing protein 19
3swm_C	2e-75	16	179	20	171	NAC domain-containing protein 19
3swm_D	2e-75	16	179	20	171	NAC domain-containing protein 19
3swp_A	2e-75	16	179	20	171	NAC domain-containing protein 19
3swp_B	2e-75	16	179	20	171	NAC domain-containing protein 19
3swp_C	2e-75	16	179	20	171	NAC domain-containing protein 19
3swp_D	2e-75	16	179	20	171	NAC domain-containing protein 19
4dul_A	2e-75	16	179	17	168	NAC domain-containing protein 19
4dul_B	2e-75	16	179	17	168	NAC domain-containing protein 19
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed during pollen development and maturation. {ECO:0000269\|PubMed:21107887}.
Uniprot	TISSUE SPECIFICITY: Expressed specifically in the tapetum. {ECO:0000269\|PubMed:21107887}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000305\|PubMed:21107887}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00058	PBM	Transfer from AT1G61110	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.4G040900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KR822709	0.0	KR822709.1 Prunus persica NAC transcription factor NAC2 (NAC2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007211453.1	0.0	NAC transcription factor 25
Swissprot	Q8GY42	1e-113	NAC25_ARATH; NAC transcription factor 25
TrEMBL	M5WFT2	0.0	M5WFT2_PRUPE; NAC transcription factor NAC2
STRING	EMJ12652	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1623	34	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	1e-104	NAC domain containing protein 25

Link Out ? help Back to Top
Phytozome	Prupe.4G040900.1.p
Entrez Gene	18778845

Publications ? help Back to Top
Zhou H, et al. Molecular genetics of blood-fleshed peach reveals activation of anthocyanin biosynthesis by NAC transcription factors. Plant J., 2015. 82(1): p. 105-21 [PMID:25688923]