PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G046000.1.p
Common NamePRUPE_ppa011804mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HSF
Protein Properties Length: 197aa    MW: 22364.5 Da    PI: 8.7243
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G046000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind97.31.6e-30191172102
                         HHHHHHHHHC......TGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT.TEEE---SSBTTTTXTTSEEEEESX CS
        HSF_DNA-bind   2 Flkklyeile......deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY.gFkkvkdeekkskskekiweFkhks 85 
                         Fl+k+y++le       ++ k+++sw+++g+ fvv+ + ef++ +LpkyFkh+nf+SF+RQLn+Y gFkk++ ++         weFkh+ 
  Prupe.4G046000.1.p  19 FLSKTYDLLEegaaeeGDSGKKIVSWNAEGSGFVVWSPAEFSELLLPKYFKHNNFSSFIRQLNTYqGFKKTSPRQ---------WEFKHER 100
                         9*********66555444899********************************************8899999887.........******* PP

                         XXXXXXXXXXXXXXXXX CS
        HSF_DNA-bind  86 Fkkgkkellekikrkks 102
                         F+kg +++l +i rkk 
  Prupe.4G046000.1.p 101 FQKGCRHMLVEITRKKC 117
                         **************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.8E-3210110IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.1E-3915115IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.14E-2415115IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004476.6E-2719115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.9E-82548IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.9E-86375IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.9E-87688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MAATTSSGQS PRTRSPAPFL SKTYDLLEEG AAEEGDSGKK IVSWNAEGSG FVVWSPAEFS  60
ELLLPKYFKH NNFSSFIRQL NTYQGFKKTS PRQWEFKHER FQKGCRHMLV EITRKKCEPS  120
AFPVYLKASE ESGSSNTAVA AAEENNCLLL MEENKNLRKQ KLELQMQISQ FKALEMKLLD  180
CLAQNMEDHQ KNKVRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d8k_B2e-14161153105Heat shock factor protein 2
5d8l_B2e-14161153105Heat shock factor protein 2
5d8l_D2e-14161153105Heat shock factor protein 2
5d8l_F2e-14161153105Heat shock factor protein 2
5d8l_H2e-14161153105Heat shock factor protein 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.4G046000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007212104.11e-143heat stress transcription factor B-2a
TrEMBLA0A251PJ221e-144A0A251PJ22_PRUPE; Uncharacterized protein
STRINGEMJ133031e-142(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113572839
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.12e-37heat shock factor 4