PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G046000.2.p
Common NamePRUPE_ppa011804mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HSF
Protein Properties Length: 196aa    MW: 22236.3 Da    PI: 8.7243
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G046000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind104.31e-32191162102
                         HHHHHHHHHC......TGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS
        HSF_DNA-bind   2 Flkklyeile......deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 
                         Fl+k+y++le       ++ k+++sw+++g+ fvv+ + ef++ +LpkyFkh+nf+SF+RQLn+YgFkk++ ++         weFkh+ F
  Prupe.4G046000.2.p  19 FLSKTYDLLEegaaeeGDSGKKIVSWNAEGSGFVVWSPAEFSELLLPKYFKHNNFSSFIRQLNTYGFKKTSPRQ---------WEFKHERF 100
                         9*********66555444899*************************************************9988.........******** PP

                         XXXXXXXXXXXXXXXX CS
        HSF_DNA-bind  87 kkgkkellekikrkks 102
                         +kg +++l +i rkk 
  Prupe.4G046000.2.p 101 QKGCRHMLVEITRKKC 116
                         *************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.3E-3410109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.9E-4215114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467859.66E-2715114IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.7E-2919114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-112548IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-116375IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-117688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MAATTSSGQS PRTRSPAPFL SKTYDLLEEG AAEEGDSGKK IVSWNAEGSG FVVWSPAEFS  60
ELLLPKYFKH NNFSSFIRQL NTYGFKKTSP RQWEFKHERF QKGCRHMLVE ITRKKCEPSA  120
FPVYLKASEE SGSSNTAVAA AEENNCLLLM EENKNLRKQK LELQMQISQF KALEMKLLDC  180
LAQNMEDHQK NKVRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d8k_B3e-16161143105Heat shock factor protein 2
5d8l_B3e-16161143105Heat shock factor protein 2
5d8l_D3e-16161143105Heat shock factor protein 2
5d8l_F3e-16161143105Heat shock factor protein 2
5d8l_H3e-16161143105Heat shock factor protein 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.4G046000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007212104.11e-145heat stress transcription factor B-2a
TrEMBLM5WVD41e-143M5WVD4_PRUPE; Uncharacterized protein
STRINGEMJ133031e-144(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.13e-39heat shock factor 4