PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G048500.1.p
Common NamePRUPE_ppa018726mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 187aa    MW: 20751.6 Da    PI: 8.4555
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G048500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.53.8e-11960255
                        HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
                 HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55
                        r+  + +E++RR++++  +++L +l+P++   +s+   s  + L  Av+YIk+ q
  Prupe.4G048500.1.p  9 RADRKTIEKNRRNQMKALYSKLNSLVPHQ---RSREvTSLPDQLDDAVNYIKKQQ 60
                        677889**********************9...88998***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.37E-5564No hitNo description
SuperFamilySSF474593.14E-11674IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.16759IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.8E-11974IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-7960IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00431365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MEQCPSSSRA DRKTIEKNRR NQMKALYSKL NSLVPHQRSR EVTSLPDQLD DAVNYIKKQQ  60
TNLEKMREKK EYLMGTEKSG NNNAGFVGGE VIGGLKSPQI EIEIQEMGSA LQVVLITGLD  120
YQFMFNESIR VLHEEGADIV NASFSIVEDT IFHTIHSKIG ESAPGPVAAR ISERLKKLVN  180
GRAGSF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.95572e-44shoot
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.4G048500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020418177.11e-136uncharacterized protein LOC18778771
SwissprotF4JIJ75e-48BH162_ARATH; Transcription factor bHLH162
TrEMBLA0A251PFV91e-135A0A251PFV9_PRUPE; Uncharacterized protein
STRINGXP_008225174.11e-130(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9063498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.12e-50bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]