PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G050400.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family SBP
Protein Properties Length: 173aa    MW: 19819.9 Da    PI: 9.0145
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G050400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP71.31.8e-2281159275
                         -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETT.T--SS--S-STTTT....-------S CS
                 SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhels.efDeekrsCrrrLa....khnerrrk 75 
                         Cq+++C+adls+ak+y+rrhkvC vh+kap+v v g++qrfCqqCs   ++  e +++k   r+ +     k  +rrr+
  Prupe.4G050400.1.p  81 CQADDCNADLSDAKQYYRRHKVCGVHAKAPAVRVGGVQQRFCQQCSSAEKIAkEKEKNKMKGRKPFTpkkkKRERRRRR 159
                         ***********************************************99986156666777887654111023333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.9E-2474133IPR004333Transcription factor, SBP-box
PROSITE profilePS5114120.06778155IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.24E-2279156IPR004333Transcription factor, SBP-box
PfamPF031101.3E-1881159IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MESNRAHGKR SLNYKMEEEE EEEEDEEEEQ EEEEDDEDTN RSSLVYGEDD RRKRVLTVNS  60
ATSTPNKRGS GAGGSMARPS CQADDCNADL SDAKQYYRRH KVCGVHAKAP AVRVGGVQQR  120
FCQQCSSAEK IAKEKEKNKM KGRKPFTPKK KKRERRRRRR KRSGLITIYC DS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-1771126156squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147161PKKKKRERRRRRRKR
2148161KKKKRERRRRRRKR
3151159KRERRRRRR
4154161RRRRRRKR
5155161RRRRRKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.65801e-176fruit| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.4G050400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007212177.13e-71squamosa promoter-binding-like protein 3
TrEMBLA0A251PFZ41e-122A0A251PFZ4_PRUPE; Uncharacterized protein
STRINGEMJ133761e-70(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53534153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.16e-20squamosa promoter binding protein-like 3