PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G050400.2.p
Common NamePRUPE_ppa012607mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family SBP
Protein Properties Length: 163aa    MW: 18620.1 Da    PI: 5.6783
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G050400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP134.53.3e-4281157278
                         -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         Cq+++C+adls+ak+y+rrhkvC vh+kap+v v g++qrfCqqCsrfh+lsefD++krsCrrrLa+hnerrrk+++
  Prupe.4G050400.2.p  81 CQADDCNADLSDAKQYYRRHKVCGVHAKAPAVRVGGVQQRFCQQCSRFHSLSEFDDNKRSCRRRLAGHNERRRKTSS 157
                         **************************************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.3E-3474142IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.86478155IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.51E-3979159IPR004333Transcription factor, SBP-box
PfamPF031103.4E-3381154IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MESNRAHGKR SLNYKMEEEE EEEEDEEEEQ EEEEDDEDTN RSSLVYGEDD RRKRVLTVNS  60
ATSTPNKRGS GAGGSMARPS CQADDCNADL SDAKQYYRRH KVCGVHAKAP AVRVGGVQQR  120
FCQQCSRFHS LSEFDDNKRS CRRRLAGHNE RRRKTSSEYH GE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-3571154184squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.65800.0fruit| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.4G050400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007212177.11e-116squamosa promoter-binding-like protein 3
TrEMBLM5WJC01e-114M5WJC0_PRUPE; Uncharacterized protein
STRINGEMJ133761e-115(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.12e-40squamosa promoter binding protein-like 3