PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G051000.2.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 727aa    MW: 81041.7 Da    PI: 4.5622
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G051000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.64.4e-08218237525
                         --SGGGGTS--TTTTT-SS-S CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                         +C+ffa+ G+C +G +CkF H
  Prupe.4G051000.2.p 218 ICDFFAK-GWCIRGTSCKFVH 237
                         6******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.23213240IPR000571Zinc finger, CCCH-type
SMARTSM003560.0092213239IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.59E-6213237IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-5218237IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 727 aa     Download sequence    Send to blast
MPRDDQSPLP GEVSDSADIE EEEEEDPEIE EEEEEDDDDE EDPEIVEEEE EEEEGEEEEE  60
EEEEEEEEEE VEGEQEEIME EERIEVDMDI SDSPVQARDH HNDVRQDYKP EGLDGIHSNE  120
SHDDGKAYLR HSVVMDAKAS NSSGVAGEEM ADAILMRDHL GKEVKSVMNP EDVMKQGDIH  180
PRNDRKQMDS RSAASEKVTR IMSPVAETSD RNKRPAIICD FFAKGWCIRG TSCKFVHIKD  240
NLNSTHPQGD VAAANCTREV QPDEGLRDIT ERSRSPGFPD PLASSHLSSE KIRFSEHKGI  300
QRRHQSLENH KFPAVPGEES NMGKYSRGNP TSQSSCMDEP AGIWSQRMHS DHNSPLVSLS  360
LNSNSSNLLT NGSFPASRIS SWTGFSLPSS YSCLDASPHG TQKLLDRNRD YHYSTRSSPL  420
LKSSSPFSSS ELKKLPSTSV SLRSDKLKTK ISSNDWEPSV PFQPSFILPP AFLSSSGSQY  480
DPLRDSIDLP KLANISFEAS FYSEEAAIGN KLHHQILGES VSGTMRPVCD GDTNSMSSHN  540
TCHEKVLDNS CYTREHNSPV TEAETVGASV VCQNGTMAIE ENLSGPSHLK GSTKPHKTSS  600
YGDSRPQSDS SRHKKDITVD RFRENNEVDG EHVTDGDVQQ ESKALRHFRA ALVELVKELL  660
KPKWREGCLS KDAHNKIVKK AVEKVLSAFQ PQQIPPTVET VLQYLSSCRP KISKLVEGYV  720
EKYGKS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.4G051000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020417567.10.0protein FRIGIDA-ESSENTIAL 1 isoform X2
TrEMBLA0A251PG180.0A0A251PG18_PRUPE; Uncharacterized protein
STRINGXP_009352887.10.0(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.11e-35C3H family protein