PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G051000.4.p
Common NamePRUPE_ppa002526mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 552aa    MW: 60681.6 Da    PI: 7.7827
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G051000.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH253.2e-081736525
                        --SGGGGTS--TTTTT-SS-S CS
             zf-CCCH  5 lCrffartGtCkyGdrCkFaH 25
                        +C+ffa+ G+C +G +CkF H
  Prupe.4G051000.4.p 17 ICDFFAK-GWCIRGTSCKFVH 36
                        6******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.00921238IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.231239IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-61236IPR000571Zinc finger, CCCH-type
PfamPF006428.6E-61736IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MSPVAETSDR NKRPAIICDF FAKGWCIRGT SCKFVHIKDN LNSTHPQGDV AAANCTREVQ  60
PDEGLRDITE RSRSPGFPDP LASSHLSSEK IRFSEHKGIQ RRHQSLENHK FPAVPGEESN  120
MGESTDAHKL HSSKDDQVFL SSFKDVGRDG HARNWPVDGY NNSPIHKDNS RFMSGLHPEP  180
GFFSNGSTAS SGKYSRGNPT SQSSCMDEPA GIWSQRMHSD HNSPLVSLSL NSNSSNLLTN  240
GSFPASRISS WTGFSLPSSY SCLDASPHGT QKLLDRNRDY HYSTRSSPLL KSSSPFSSSE  300
LKKLPSTSVS LRSDKLKTKI SSNDWEPSVP FQPSFILPPA FLSSSGSQYD PLRDSIDLPK  360
LANISFEASF YSEEAAIGNK LHHQILGESV SGTMRPVCDG DTNSMSSHNT CHEKVLDNSC  420
YTREHNSPVT EAETVGASVV CQNGTMAIEE NLSGPSHLKD GDVQQESKAL RHFRAALVEL  480
VKELLKPKWR EGCLSKDAHN KIVKKAVEKV LSAFQPQQIP PTVETVLQYL SSCRPKISKL  540
VEGYVEKYGK S*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.4G051000.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007211370.20.0protein FRIGIDA-ESSENTIAL 1 isoform X1
RefseqXP_020417569.10.0protein FRIGIDA-ESSENTIAL 1 isoform X3
TrEMBLA0A251PHH50.0A0A251PHH5_PRUPE; Uncharacterized protein
STRINGEMJ125690.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.17e-32C3H family protein