PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G053800.3.p
Common NamePRUPE_ppa002065m1g
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ARF
Protein Properties Length: 579aa    MW: 63680 Da    PI: 9.2752
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G053800.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.91.1e-242103199
                         EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                         f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F   
  Prupe.4G053800.3.p   2 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyN-QQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFL-- 89 
                         99****************************963.3445679************************************************.. PP

                         SSSEE..EEEEE-S CS
                  B3  86 grsefelvvkvfrk 99 
                         + +++el+++++r+
  Prupe.4G053800.3.p  90 RGDDGELRLGIRRA 103
                         3489999****996 PP
2Auxin_resp1219e-40128209182
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                         +++a+s+k++F+++YnPras+seF+++ +k++++l++++s+GmRfkm+feted++err++G+++g+s+ldpvrWp+SkWr+L
  Prupe.4G053800.3.p 128 VVNAISMKNAFNIFYNPRASSSEFIIPSRKFLRSLDHSFSPGMRFKMRFETEDAAERRYTGLITGISELDPVRWPGSKWRCL 209
                         6899*****************************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.92E-411110IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.3E-391107IPR015300DNA-binding pseudobarrel domain
CDDcd100171.54E-221102No hitNo description
SMARTSM010193.6E-232104IPR003340B3 DNA binding domain
PROSITE profilePS5086313.4792104IPR003340B3 DNA binding domain
PfamPF023621.1E-222103IPR003340B3 DNA binding domain
PfamPF065072.5E-34129209IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010050Biological Processvegetative phase change
GO:0010158Biological Processabaxial cell fate specification
GO:0010582Biological Processfloral meristem determinacy
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MFCKTLTASD TSTHGGFSVP RRAAEDCFPP LDYNQQRPSQ ELVAKDLHGL EWRFRHIYRG  60
QPRRHLLTTG WSAFVNKKKL VSGDAVLFLR GDDGELRLGI RRAAQVKGSA TYPTLCSQQL  120
NYNTITDVVN AISMKNAFNI FYNPRASSSE FIIPSRKFLR SLDHSFSPGM RFKMRFETED  180
AAERRYTGLI TGISELDPVR WPGSKWRCLV VRWDDIDTSK HGRVSPWEIE PSGSVSSSHS  240
LMAAGLKRAR SGLSAAKTEF PVPNGIGASD FGESLRFQKV LQGQEILGFD THFGGLGGQN  300
QHPSEPRRGF HGSSGSGIAA GGNGLRKSLA HSEITSTGIG FGESFRFHKV LQGQEIFPSP  360
PYGRASTNNE AHEYGGPGIY DGFQVPSFRN GWPAMMQSNN AHVRPSASSV QVSSPSSVLM  420
FQQAMNPGPE FNSVYNGHNQ EEQRVIKRTP YVSESDGGKQ ASSSFCERSF SREDHGGMNS  480
YNQHGISNHP VISQSTFSGS QDAVSPYKGS CRLFGFSLSE EKRVPDRESN STSTASTLNP  540
GVQFHSKPAL MTSAVGITCT KEWAFDWRGE RMESCLQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-842238158396Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.49261e-156fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00021PBMTransfer from AT2G33860Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.4G053800.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2834700.0KP283470.1 Prunus armeniaca auxin response factor 3 (ARF3) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007213792.10.0auxin response factor 3
SwissprotQ8S9851e-151ARFO_ORYSJ; Auxin response factor 15
TrEMBLM5WP210.0M5WP21_PRUPE; Auxin response factor
STRINGEMJ149910.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-150ARF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Khanday I,Yadav SR,Vijayraghavan U
    Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways.
    Plant Physiol., 2013. 161(4): p. 1970-83
    [PMID:23449645]