PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G066100.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 57aa    MW: 6364.03 Da    PI: 4.4945
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G066100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H224.57e-082041223
                        EETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                        +C+ Cg sF+ + +LkrH+++H
  Prupe.4G066100.1.p 20 TCQECGASFKKPAYLKRHLQSH 41
                        6*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.63E-61542No hitNo description
Gene3DG3DSA:3.30.160.601.5E-61642IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00961941IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.6141946IPR007087Zinc finger, C2H2
PROSITE patternPS0002802141IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 57 aa     Download sequence    Send to blast
MEMANEADED GEGEREKSNT CQECGASFKK PAYLKRHLQS HSLEDSTFLT TIIWIS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.4G066100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016647088.11e-16PREDICTED: transcription factor IIIA-like
TrEMBLA0A251PGP13e-34A0A251PGP1_PRUPE; Uncharacterized protein
STRINGXP_008222684.14e-26(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30693370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-11transcription factor IIIA