PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.4G070500.1.p

Common Name

FAR, PRUPE_ppa010595mg

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

MIKC_MADS

Protein Properties

Length: 244aa MW: 27991.7 Da PI: 9.8413

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.4G070500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	98.9	2e-31	25	74	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+ Prupe.4G070500.1.p 25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSNRGRLYEYA 74 79***********************************************8 PP
2	K-box	118.8	4.6e-39	94	189	6	100
K-box 6 gks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 ++ ++ea ++++qqe+akL+++i nLq++ Rh++Ge+L+s+++k+L++Le++Lek++++iRskKnell+++ie++qk+e +l+++n+ Lr Prupe.4G070500.1.p 94 NTGsVSEASTQYYQQEAAKLRAQIGNLQNSSRHMMGESLSSMNMKDLKNLESKLEKGINRIRSKKNELLFAEIEYMQKREIDLHNNNQLLR 184 333599*********************************************************************************** PP K-box 96 kklee 100 +k++e Prupe.4G070500.1.p 185 AKIAE 189 986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	33.613	17	77	IPR002100	Transcription factor, MADS-box
SMART	SM00432	7.1E-41	17	76	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.03E-33	18	95	IPR002100	Transcription factor, MADS-box
CDD	cd00265	9.74E-45	18	92	No hit	No description
PRINTS	PR00404	5.9E-33	19	39	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	19	73	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.2E-26	26	73	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.9E-33	39	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.9E-33	54	75	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	7.0E-29	100	187	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	15.587	103	193	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048366	Biological Process	leaf development
GO:0048440	Biological Process	carpel development
GO:0048443	Biological Process	stamen development
GO:0048497	Biological Process	maintenance of floral organ identity
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MAYENKSMSL DSPQRKLGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA 60 LIVFSNRGRL YEYANNSVKE TIERYKKACA ESTNTGSVSE ASTQYYQQEA AKLRAQIGNL 120 QNSSRHMMGE SLSSMNMKDL KNLESKLEKG INRIRSKKNE LLFAEIEYMQ KREIDLHNNN 180 QLLRAKIAEN ERSQQNINVM AGGGSYEIMQ SQPYDSRNYF QVNALQPNHQ YNSRQDPMAL 240 QLV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	2e-20	17	85	1	69	Myocyte-specific enhancer factor 2B
1tqe_Q	2e-20	17	85	1	69	Myocyte-specific enhancer factor 2B
1tqe_R	2e-20	17	85	1	69	Myocyte-specific enhancer factor 2B
1tqe_S	2e-20	17	85	1	69	Myocyte-specific enhancer factor 2B
6c9l_A	2e-20	17	85	1	69	Myocyte-specific enhancer factor 2B
6c9l_B	2e-20	17	85	1	69	Myocyte-specific enhancer factor 2B
6c9l_C	2e-20	17	85	1	69	Myocyte-specific enhancer factor 2B
6c9l_D	2e-20	17	85	1	69	Myocyte-specific enhancer factor 2B
6c9l_E	2e-20	17	85	1	69	Myocyte-specific enhancer factor 2B
6c9l_F	2e-20	17	85	1	69	Myocyte-specific enhancer factor 2B
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppe.1710	0.0	fruit

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Flower. Preferentially expressed in stamen and carpel and weakly in petal. Undetected in leaves and roots.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00609	ChIP-seq	Transfer from AT4G18960	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.4G070500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY705972	0.0	AY705972.1 Prunus persica MADS4 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007211925.1	1e-179	floral homeotic protein AGAMOUS isoform X2
Refseq	XP_008225406.1	1e-179	PREDICTED: floral homeotic protein AGAMOUS isoform X3
Refseq	XP_008225408.1	1e-179	PREDICTED: floral homeotic protein AGAMOUS isoform X2
Refseq	XP_008225409.1	1e-179	PREDICTED: floral homeotic protein AGAMOUS isoform X4
Refseq	XP_020417372.1	1e-179	floral homeotic protein AGAMOUS isoform X3
Refseq	XP_021825649.1	1e-179	floral homeotic protein AGAMOUS isoform X2
Refseq	XP_021825651.1	1e-179	floral homeotic protein AGAMOUS isoform X2
Refseq	XP_021825652.1	1e-179	floral homeotic protein AGAMOUS isoform X3
Swissprot	Q40872	1e-130	AG_PANGI; Floral homeotic protein AGAMOUS
TrEMBL	A7UGU4	1e-178	A7UGU4_PRUMU; AGAMOUS-like protein
TrEMBL	A7UHZ1	1e-178	A7UHZ1_PRUPE; AGAMOUS-like protein
TrEMBL	D9Z5S2	1e-178	D9Z5S2_9ROSA; AGAMOUS-like protein
STRING	XP_008225406.1	1e-178	(Prunus mume)
STRING	EMJ13124	1e-179	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF684	29	102

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18960.1	1e-126	MIKC_MADS family protein

Link Out ? help Back to Top
Phytozome	Prupe.4G070500.1.p
Entrez Gene	18778628

Publications ? help Back to Top
Tadiello A, et al. A PLENA-like gene of peach is involved in carpel formation and subsequent transformation into a fleshy fruit. J. Exp. Bot., 2009. 60(2): p. 651-61 [PMID:19264761]