PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G077800.1.p
Common NamePRUPE_ppa024816mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 188aa    MW: 20755.8 Da    PI: 10.2206
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G077800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.81e-211053245
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                         ++++s rqvtfskRr+g++KKA+EL +LC+ae+ vi+fs+ gk
  Prupe.4G077800.1.p 10 MVKDSSSRQVTFSKRRTGLFKKANELATLCGAEIGVIVFSPGGK 53
                        6799*************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006626.661161IPR002100Transcription factor, MADS-box
SMARTSM004327.9E-36160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-28276IPR002100Transcription factor, MADS-box
CDDcd002652.26E-34275No hitNo description
PRINTSPR004043.0E-20323IPR002100Transcription factor, MADS-box
PfamPF003192.8E-251157IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-202338IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-203859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MGRRKIEMKM VKDSSSRQVT FSKRRTGLFK KANELATLCG AEIGVIVFSP GGKPFSFGHP  60
NVESIADRFL NQEGSKSKAG SSNSKNDETV ERLSQQLDDL NKKLEAEKKR GHMLDKAILK  120
AKGLPLKSKA PNVHELSQAD LQKMKESLEQ LREKVKARAC EMEASSSLLL LANEPDIETD  180
RTVAKNE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-15192190MEF2 CHIMERA
6byy_B1e-15192190MEF2 CHIMERA
6byy_C1e-15192190MEF2 CHIMERA
6byy_D1e-15192190MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.4G077800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP3475520.0KP347552.1 Prunus pseudocerasus MADS-box protein MADS2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007213148.11e-134agamous-like MADS-box protein AGL29
TrEMBLM5WKM51e-132M5WKM5_PRUPE; MADS-box protein 38
STRINGEMJ143471e-133(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24242979
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.14e-43AGAMOUS-like 29