PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G124000.3.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 344aa    MW: 37208.4 Da    PI: 8.0136
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G124000.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH291.9e-092854127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                        ++++ C++f +t  Ck+G rCkF+H++
  Prupe.4G124000.3.p 28 PGEPDCPYFIKTQRCKFGMRCKFNHPK 54
                        5789*********************96 PP
2zf-CCCH40.16e-1377101327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         +++C f+++tG+Ck+G++CkF+H++
  Prupe.4G124000.3.p  77 EPPCAFYMKTGQCKFGATCKFHHPK 101
                         79*********************96 PP
3zf-CCCH39.11.3e-12151176126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         ++++ C+f+++tG CkyG++C+++H+
  Prupe.4G124000.3.p 151 PGEPDCPFYLKTGSCKYGATCRYNHP 176
                         5789*********************9 PP
4zf-CCCH37.53.9e-12238260426
                         ---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                          +C+++++tG+C++G++Ck++H+
  Prupe.4G124000.3.p 238 IECDYYMKTGECRFGEQCKYHHP 260
                         68********************8 PP
5zf-CCCH40.93.4e-13291316227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         + ++C ++++tGtCkyG++CkF H+p
  Prupe.4G124000.3.p 291 GVAICVYYLKTGTCKYGATCKFDHPP 316
                         5789********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.1832755IPR000571Zinc finger, CCCH-type
SMARTSM003560.00182754IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-62954IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-53257IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-43355IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.94874102IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-674101IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-1077101IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-677102IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-679100IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.892150178IPR000571Zinc finger, CCCH-type
SMARTSM003565.5E-7150177IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-10152176IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-5155177IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4156175IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-6233263IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.028234262IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-6234261IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-10237260IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.6E-5240260IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.516289317IPR000571Zinc finger, CCCH-type
SMARTSM003567.6E-8289316IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-10291316IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-6292316IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-6294314IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MSSPAFPASN AHLKVPLVAP SESLPERPGE PDCPYFIKTQ RCKFGMRCKF NHPKEKLAAA  60
VASENADVFA LPERPSEPPC AFYMKTGQCK FGATCKFHHP KDIQIPSAEQ ENKIGETGTT  120
IQPEGTGFAV KLPVSFSPAL LYNSKELPVR PGEPDCPFYL KTGSCKYGAT CRYNHPDRYD  180
FCAAINPPIG AISHPIVAPP AAGLNIGVIN PAASIYQTLA QPTVGGGQTV YPQRFGQIEC  240
DYYMKTGECR FGEQCKYHHP IDRSAVTLST TKPVQQQNVK LTLAGLPRRE GVAICVYYLK  300
TGTCKYGATC KFDHPPPGEV MGMAASQGAS GGEANDFTHE QQQ*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in inflorescences, at intermediate levels in leaves and stems and at lower levels in roots. {ECO:0000269|PubMed:11595801}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.4G124000.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020418212.10.0zinc finger CCCH domain-containing protein 37 isoform X1
SwissprotQ941Q31e-135C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A251PL210.0A0A251PL21_PRUPE; Uncharacterized protein
STRINGEMJ130450.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-134floral homeotic protein (HUA1)