PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G154100.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family STAT
Protein Properties Length: 701aa    MW: 78649.3 Da    PI: 6.1367
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G154100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT195.45.7e-612293501122
                STAT   1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipk 91 
                         ldvvll+a+++p++k++ev+asL+yad+g++vek++d eapLL+s dGvef+s drp+k+l+G+asfklkisqLsskcdnr+fri+f++pk
  Prupe.4G154100.1.p 229 LDVVLLDAFSHPINKELEVIASLVYADNGAPVEKTSDGEAPLLASQDGVEFASCDRPSKMLHGHASFKLKISQLSSKCDNRMFRIMFHMPK 319
                         8****************************************************************************************** PP

                STAT  92 lkkypfleavskpirCisrsrntrsssltkk 122
                         l++ypfl+a+s pirCisr+r+tr+ss+ +k
  Prupe.4G154100.1.p 320 LETYPFLKAFSPPIRCISRNRSTRMSSRLWK 350
                         **************************99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.505.101.4E-7594684IPR000980SH2 domain
SuperFamilySSF555501.76E-8598691IPR000980SH2 domain
PROSITE profilePS5000110.048602684IPR000980SH2 domain
Sequence ? help Back to Top
Protein Sequence    Length: 701 aa     Download sequence    Send to blast
MANEEKDSVE YYSLLKDFRA EIEVQEGAFS LCFWLYLMSS TAFPARLIQV QSGATEGAPF  60
LVLSEKKKMV LLPLGIVHKE APETCDLTSL SEVPHVAMET EFPMEKWIHI GCEVSSDFVL  120
LHIDGEIAGK RAMSPLFNKD SISGGLTKIT LVCGGGDDNS LQGYVHNHKV LPLTSSIMEY  180
YAKRNIFVFQ DPPLQLSIDN SSASEIEEGS DGVWSIVGGK ASCRRIFSLD VVLLDAFSHP  240
INKELEVIAS LVYADNGAPV EKTSDGEAPL LASQDGVEFA SCDRPSKMLH GHASFKLKIS  300
QLSSKCDNRM FRIMFHMPKL ETYPFLKAFS PPIRCISRNR STRMSSRLWK RPASANDQLN  360
LSQLSGLDDE TLELHHSSIH EEKLSPSSKR CRLGQDDECN SHSRTANQVK NVVRRSDSLE  420
ELDDSQTDSE NPEARNSALK STSSSRNPMS DATIFKYCLA GLTEKTLLLK EISSTVSNEE  480
LLSFSHQVSL YSGCSHHRHQ IAMAKQLIEE GNKAWNLISQ NKHQVPWESV VFEIEEQFMK  540
IAACNSRALT QQDFELLRRI AGCQEYLAQE NFEKMWCWLY PVALTLSKDW INTMWSSTSP  600
KWIEGFITKE EAETSLQGSR GLQESGTFVL RFPNSRSWPH PDAGSLVVTY VGSKHTIHNK  660
LISLDQMFSF AEREKNAKPL QDMLLAEPEL SRLGRIIRSR *
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, leaves, stems and flowers. {ECO:0000269|PubMed:15073273}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.4G154100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020418855.10.0uncharacterized protein LOC18779814 isoform X1
SwissprotQ56XZ10.0SHB_ARATH; SH2 domain-containing protein B
TrEMBLA0A251PL090.0A0A251PL09_PRUPE; Uncharacterized protein
STRINGXP_008226365.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67103036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78540.10.0SH2 domain protein B
Publications ? help Back to Top
  1. Yamada Y,Wang HY,Fukuzawa M,Barton GJ,Williams JG
    A new family of transcription factors.
    Development, 2008. 135(18): p. 3093-101
    [PMID:18701541]