PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G156600.1.p
Common NamePRUPE_ppa009344mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family DBB
Protein Properties Length: 297aa    MW: 31460.3 Da    PI: 5.1568
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G156600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.11.4e-06447542
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                         C+ +e  e++  C  ++  lC  C ++ Hk       H++vpl
  Prupe.4G156600.1.p  4 QCNVCEAAEANVLCCADEAALCWACDEKVHKAnklaskHQRVPL 47
                        7******99*********************88999999999986 PP
2zf-B_box29.51.5e-095292337
            zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                        ++kC+ ++e    +fC +++ llC++C +++H        H
  Prupe.4G156600.1.p 52 MPKCDICQEAVGYFFCLEDRALLCRTCDVAIHAAnslvsaH 92
                        799*******9*********************655566666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.708147IPR000315B-box-type zinc finger
CDDcd000213.46E-7347No hitNo description
SMARTSM003369.1E-11447IPR000315B-box-type zinc finger
PfamPF006433.5E-5447IPR000315B-box-type zinc finger
SMARTSM003363.8E-165097IPR000315B-box-type zinc finger
PROSITE profilePS501199.1295097IPR000315B-box-type zinc finger
PfamPF006436.0E-75284IPR000315B-box-type zinc finger
CDDcd000215.02E-85397No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MKIQCNVCEA AEANVLCCAD EAALCWACDE KVHKANKLAS KHQRVPLSAS HMPKCDICQE  60
AVGYFFCLED RALLCRTCDV AIHAANSLVS AHRRFLLTGI KVGPEPTEPD SGGGGVGGGG  120
VGVGASSSSV KLRSGSGSGS GSGSRCDTHN PMPVECKVAP AGVDVMPFAG GSSAGTVPQW  180
HIDEFLGLSD FDQSFSYIEN GSSKADCGKL GEYDSPALKS SEEEMEDYEC IGEVPETSWM  240
VPQVPSPPTA SGLYWPRSSQ ISSDFAVFVP DICHSQMQNP LYSQHNGTVS KRRRQF*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.4G156600.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ7321780.0JQ732178.1 Prunus persica light-regulated zinc finger protein 1 (LZF1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007211715.10.0B-box zinc finger protein 22
SwissprotQ9SYM21e-85BBX22_ARATH; B-box zinc finger protein 22
TrEMBLM5WGR00.0M5WGR0_PRUPE; Uncharacterized protein
STRINGEMJ129140.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45663453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.13e-87light-regulated zinc finger protein 1