PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G178000.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 243aa    MW: 27456.6 Da    PI: 10.128
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G178000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.43e-191781699
                        EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                  B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                        +++p kf+++++   + + +  l  ++g +W v+l  + + ++ ++++GW++Fvk+++L++gDf+vFk+dg+s+f  +v+++++
  Prupe.4G178000.1.p  1 MRIPPKFVKNFNVR-PLH-KCALSGPTGIRWAVEL--EERENGLFFQDGWQGFVKDHHLEDGDFLVFKYDGESKF--KVTIYDR 78
                        68******666544.454.899*************..**********************************9999..8988886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100179.86E-18177No hitNo description
SuperFamilySSF1019362.94E-20184IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.735179IPR003340B3 DNA binding domain
SMARTSM010193.5E-8179IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.1E-20181IPR015300DNA-binding pseudobarrel domain
PfamPF023626.2E-17178IPR003340B3 DNA binding domain
SuperFamilySSF1019364.32E-6157238IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.3E-5158238IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.007161242IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MRIPPKFVKN FNVRPLHKCA LSGPTGIRWA VELEERENGL FFQDGWQGFV KDHHLEDGDF  60
LVFKYDGESK FKVTIYDRTA CEKNVKVAER SGCPVSLANK GKAQVKEEIV DRETRNYNKN  120
CQNKAIVSGR RSGNYVIPGK RPANDHVGAT STEPVLFKPK YSCFIITFTR KLRYGVSIPK  180
EVAVTEDLLS KKSMMIQDPT GRSWPVKLRV RGKVSSCRVN MSTGLVDCCN GNQIIPRDTR  240
HF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.4G178000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020417856.10.0putative B3 domain-containing protein At5g66980
TrEMBLA0A251PM821e-180A0A251PM82_PRUPE; Uncharacterized protein
STRINGXP_008226826.11e-168(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71851546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.11e-17B3 family protein