PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G178400.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 260aa    MW: 29189.8 Da    PI: 9.7952
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G178400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.12.8e-1715101195
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         ffkvl        ++l+lp  f+ +++g++++  +  l+ ++g+ W+v l  + + +++++++GW++F  ++ Lk+g f+vF ++g  +f 
  Prupe.4G178400.1.p  15 FFKVL--LGDDFPRQLCLPPAFMVHYNGPSHC--KCALRGPTGKWWTVGL--EEREDGFYFREGWRRFLTDHSLKVGYFLVFDHQGGPKF- 98 
                         66666..33444456***********999666..7***************..*******************************9887777. PP

                         .EEE CS
                  B3  92 lvvk 95 
                           v+
  Prupe.4G178400.1.p  99 -DVT 101
                         .444 PP
2B348.21.9e-151552401399
                         TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                  B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                         + r+ +pk+ a + g++  ++ +++l+d++grsW+vkl+    + ++gr ++t+G     +an++  gD++vF+l++rse    v++fr+
  Prupe.4G178400.1.p 155 QYRMNIPKELAVAEGLI--GKEKVMLKDPNGRSWNVKLRLdnkEHHGGRLLMTQGLVACWQANNISLGDTIVFELVKRSEM--EVHIFRT 240
                         5689*******999988..5569***************99544444555*************************9986555..9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.61E-2210108IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.6E-2211108IPR015300DNA-binding pseudobarrel domain
CDDcd100174.74E-1913103No hitNo description
SMARTSM010193.4E-1215106IPR003340B3 DNA binding domain
PfamPF023621.5E-131598IPR003340B3 DNA binding domain
PROSITE profilePS5086311.06848106IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-18140239IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-16141240IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.771143241IPR003340B3 DNA binding domain
CDDcd100172.39E-13145239No hitNo description
SMARTSM010191.8E-10147241IPR003340B3 DNA binding domain
PfamPF023621.2E-12156240IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MARKPTKPCP KLPSFFKVLL GDDFPRQLCL PPAFMVHYNG PSHCKCALRG PTGKWWTVGL  60
EEREDGFYFR EGWRRFLTDH SLKVGYFLVF DHQGGPKFDV TIYHPMGCDM RRSIGNSDKP  120
GKRPATAAAV EETSTGSIVF RSEHPCFIRI LGKNQYRMNI PKELAVAEGL IGKEKVMLKD  180
PNGRSWNVKL RLDNKEHHGG RLLMTQGLVA CWQANNISLG DTIVFELVKR SEMEVHIFRT  240
GAGGNMPSVV LDASSSFKH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.4G178400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008226604.11e-176PREDICTED: B3 domain-containing protein REM5-like
TrEMBLA0A251PM680.0A0A251PM68_PRUPE; Uncharacterized protein
STRINGXP_008226604.11e-176(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71851546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.11e-21B3 family protein