PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G178500.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 242aa    MW: 27140.8 Da    PI: 8.4687
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G178500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.12.2e-151392281199
                         HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                  B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                          ++ rl +pk  a + g++   +k + +ed++g sW+vk++    + ++gr ++tkG ++  +an++  gD++vF+l +++++ +++ +fr
  Prupe.4G178500.1.p 139 KNHYRLNIPKALAVAKGLIR--KKSVEVEDPNGISWDVKVRLhgkEHRGGRLFMTKGLSKCFHANNISLGDTLVFELFNTKSGGMKIYIFR 227
                         567899***********995..557***************99775555666*************************99999999*****99 PP

                         S CS
                  B3  99 k 99 
                          
  Prupe.4G178500.1.p 228 G 228
                         6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508638.318158IPR003340B3 DNA binding domain
SuperFamilySSF1019361.75E-8656IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.6E-72365IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-15126228IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.0E-16126227IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.503129229IPR003340B3 DNA binding domain
CDDcd100174.55E-16131227No hitNo description
SMARTSM010191.4E-8133229IPR003340B3 DNA binding domain
PfamPF023622.2E-13139228IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MNYVNGRLPP TCTLRGPSGE CWTGWQGFVK DHSLEIANFL VFDYGGKSKF DVTMYDPIGT  60
EKELEPAEKR RGNRAQLEEE IIELETEEPD EESEEDARIS NIRKCKSGKR IATDGGKEKS  120
NAHVAFRSKH PCFIGTMTKN HYRLNIPKAL AVAKGLIRKK SVEVEDPNGI SWDVKVRLHG  180
KEHRGGRLFM TKGLSKCFHA NNISLGDTLV FELFNTKSGG MKIYIFRGNS NVLLDASNVE  240
Y*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.4G178500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021801202.11e-160putative B3 domain-containing protein Os03g0621600
TrEMBLA0A251PNM91e-179A0A251PNM9_PRUPE; Uncharacterized protein
STRINGEMJ136411e-140(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71851546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-12B3 family protein