PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G206800.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 96aa    MW: 10800.5 Da    PI: 10.7341
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G206800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.74.4e-131594187
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87
                        ffk+l     ++++ l ++  f+++++g   + ++ +l+ +sg+   v+l  + + ++ +++kG ++Fvk+++L++g f+vF++dg+
  Prupe.4G206800.1.p 15 FFKIL--LGDFSKH-LHISPVFIKNFNGG--SLRKCSLRGPSGKGRAVEL--EERENGLFFSKGLQGFVKDHHLEVGNFLVFRYDGE 94
                        66666..6677777.99999999777555..45589**************..*******************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.94E-141094IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-141194IPR015300DNA-binding pseudobarrel domain
CDDcd100176.91E-101495No hitNo description
SMARTSM010190.0061595IPR003340B3 DNA binding domain
PfamPF023628.2E-111594IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
MARKLTKRSV KKESFFKILL GDFSKHLHIS PVFIKNFNGG SLRKCSLRGP SGKGRAVELE  60
ERENGLFFSK GLQGFVKDHH LEVGNFLVFR YDGES*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.4G206800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021801201.13e-57B3 domain-containing protein Os01g0723500-like
TrEMBLA0A251PNN27e-61A0A251PNN2_PRUPE; Uncharacterized protein
STRINGEMJ155394e-56(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71851546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.11e-11B3 family protein