PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G206900.1.p
Common NamePRUPE_ppa015369mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 126aa    MW: 14137.5 Da    PI: 10.2232
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G206900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.81.7e-17341121191
                         HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                          k+  +++pk+ a + g++  ++kt++l+d+ grsW vkl++ k++   + +tkGW + ++an++ +gD++vF++++  ++e
  Prupe.4G206900.1.p  34 KKLYSVTIPKELAIAEGLV--RKKTVKLQDPAGRSWIVKLRVHKSPYLrFDMTKGWAKCCRANQISQGDTIVFEFVK-PSGE 112
                         4556689******999999..6779***************77555543699***********************987.5554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.3E-1821110IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.81E-1823110IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.75824121IPR003340B3 DNA binding domain
CDDcd100176.53E-1627114No hitNo description
SMARTSM010192.5E-1128121IPR003340B3 DNA binding domain
PfamPF023627.4E-1534111IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MCGKRPANDC VEETSTRSIL FESENSCFVK TLTKKLYSVT IPKELAIAEG LVRKKTVKLQ  60
DPAGRSWIVK LRVHKSPYLR FDMTKGWAKC CRANQISQGD TIVFEFVKPS GEIKHRTLGM  120
TNVTN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.4G206900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008226602.11e-67PREDICTED: putative B3 domain-containing protein At5g66980
TrEMBLM5X2H02e-88M5X2H0_PRUPE; Uncharacterized protein (Fragment)
STRINGEMJ157283e-89(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71851546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.15e-15B3 family protein