PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G207000.1.p
Common NamePRUPE_ppa021660mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 167aa    MW: 19132.6 Da    PI: 5.3584
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G207000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.91.4e-1615103197
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         ffkvl     + ++ l+lp  f+e+ +g++  + +  l+ ++g+ W+v+l  + + +++++ +GW++Fv+++ L+ g f+vF +dg+s+f 
  Prupe.4G207000.1.p  15 FFKVL--LGDFYQH-LRLPPVFIEKLDGES-LP-KCDLRGPNGKLWTVEL-EEIRENGFFFHDGWQGFVRDHCLEIGNFLVFDYDGDSKF- 98 
                         66666..6666666.9********997763.44.89**************.3555666****************************9999. PP

                         .EEEEE CS
                  B3  92 lvvkvf 97 
                           v+++
  Prupe.4G207000.1.p  99 -DVTIY 103
                         .66665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-219108IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.8312106IPR003340B3 DNA binding domain
SuperFamilySSF1019361.04E-2113112IPR015300DNA-binding pseudobarrel domain
CDDcd100174.05E-1914103No hitNo description
PfamPF023624.1E-1415101IPR003340B3 DNA binding domain
SMARTSM010196.0E-1515106IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MATKLSKPSL QKQSFFKVLL GDFYQHLRLP PVFIEKLDGE SLPKCDLRGP NGKLWTVELE  60
EIRENGFFFH DGWQGFVRDH CLEIGNFLVF DYDGDSKFDV TIYEPTGCEK DVEAAKRRNG  120
NPVSSVKDEI VDIETENYNK ESKSKTINAE RTSRKFYSIL NLLLNS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.4G207000.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008226602.11e-106PREDICTED: putative B3 domain-containing protein At5g66980
TrEMBLM5WXK11e-119M5WXK1_PRUPE; Uncharacterized protein
STRINGEMJ140781e-120(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71851546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.11e-22B3 family protein