PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G215500.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 531aa    MW: 57824.2 Da    PI: 7.7334
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G215500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.46.7e-184592148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+ Ed++l ++v+++G g+W+++ r  g++R++k+c++rw ++l
  Prupe.4G215500.1.p 45 KGPWTAVEDQILMEYVRKHGEGNWNAVQRNSGLNRCGKSCRLRWANHL 92
                        79******************************************9986 PP
2Myb_DNA-binding46.67.9e-1598141146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         +g+++ +E+ l++++++++G++ W++ a+ ++ gRt++++k++w++
  Prupe.4G215500.1.p  98 KGAFSHDEERLILELHAKYGNK-WARMASQLP-GRTDNEIKNYWNT 141
                         799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.7414092IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-234095IPR009057Homeodomain-like
SuperFamilySSF466891.87E-3042139IPR009057Homeodomain-like
SMARTSM007172.5E-154494IPR001005SANT/Myb domain
PfamPF002496.4E-164592IPR001005SANT/Myb domain
CDDcd001671.64E-114792No hitNo description
PROSITE profilePS5129424.92493147IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.5E-2496146IPR009057Homeodomain-like
SMARTSM007171.4E-1597145IPR001005SANT/Myb domain
PfamPF002493.7E-1498141IPR001005SANT/Myb domain
CDDcd001672.88E-11100141No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MMTPSSSSNN NSGLLQQNEG RSPQELSGGG GGGGDVVEGS KGLKKGPWTA VEDQILMEYV  60
RKHGEGNWNA VQRNSGLNRC GKSCRLRWAN HLRPNLKKGA FSHDEERLIL ELHAKYGNKW  120
ARMASQLPGR TDNEIKNYWN TRVKRRQRQG LPLYPNDIKQ PQQSHSHSRS LPTTTIQNPF  180
QSTNNCTTPT FSFQIQSPIQ AHHMHSLSPT PPSLSPLSSP HHPKSTTLTS LPLFDPSNPP  240
TTSSFSSFTF HRPAPILGAP VRYKRYRDSV GFSPPVSPTP QRSASILRAN SMPDIASSHL  300
TITNSIPEIA SFQFPRTLNP SLPPLPSSRT QFEYSESFLS STGSVYSVKS ELPSSQVSQT  360
QSEVTIDTKV SSTAAAAAVS ASQSHSSNGL LEDLLQEAEV LACGGGNPSK RANGLFSSFE  420
EKHVLDNYTR WLQSTSSLEG SLLEAKPIQD DHISSLPEDL SKLFSFIPST EPISDWYSDS  480
GELSNGHSSG LTDACLDFDM QQHMAALFPV TATAEHGKAS SSWDNLPGIC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-31391461107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.4G215500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020417031.10.0transcription factor MYB28
TrEMBLA0A251PP340.0A0A251PP34_PRUPE; Uncharacterized protein
STRINGXP_008385967.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.13e-69myb domain protein 101