PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G232600.2.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family WRKY
Protein Properties Length: 538aa    MW: 59387.6 Da    PI: 6.4673
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G232600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.26.2e-32179236260
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                         dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  ers+ d++++ei+Y+g+H+h+k
  Prupe.4G232600.2.p 179 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPK 236
                         8****************************************.***************85 PP
2WRKY106.41.5e-33354412159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  Prupe.4G232600.2.p 354 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 412
                         59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182907.72E-25177237IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.4E-27178237IPR003657WRKY domain
SMARTSM007744.1E-34178236IPR003657WRKY domain
PfamPF031061.5E-24179235IPR003657WRKY domain
PROSITE profilePS5081122.791179237IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-37339414IPR003657WRKY domain
SuperFamilySSF1182902.09E-29346414IPR003657WRKY domain
PROSITE profilePS5081138.825349414IPR003657WRKY domain
SMARTSM007743.1E-39354413IPR003657WRKY domain
PfamPF031063.1E-26355412IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MCFMEDMTFI VLIVIRDDCS CSKLFAVTSV MWAEPSPTTG SFLKPQMVYG SLSSTTYSAT  60
TMCSDFDTFD ERNSGSFEFK PHAGSNMVTT DYNHQRNDQL VQGQAQPQSL VSPPLVKSEM  120
AVSSNELSLS APVHMVTSGA SAPPEGDSDD LSQRGHPNPG VQTSQFDHKG SGPSVISSDD  180
GYNWRKYGQK HVKGSEFPRS YYKCTHPNCE VKKLFERSHD GQITEIIYKG THDHPKPQPS  240
RRYNTGAMMP IQEERSEKAS SLIGRDDKPS SIYGQMSSTN EPNSTPERSP VTGNDDSVEG  300
TGSLSNRMAE EIDDDDPFSK RRRMDVGGVD VTPVVKPIRE PRVVVQTLSE VDILDDGYRW  360
RKYGQKVVRG NPNPRSYYKC TNAGCPVRKH VERASHDPKA VITTYEGKHN HDVPTARNSS  420
HDTSGPTTVN GPSRIRSEES DTISLDLGVG INSAAENKSN EHLQLHSELM ERQSHTSSNF  480
KAIQTTPVST YYGVLNSGMN QYGSRENPSE SRSIEIPPLN HSSYPYPQNM GRVLTGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-36179414877Probable WRKY transcription factor 4
2lex_A1e-36179414877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.4G232600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ9333880.0KJ933388.1 Rosa hybrid cultivar Radrazz SUSI1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020418685.10.0probable WRKY transcription factor 20 isoform X3
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A251PT150.0A0A251PT15_PRUPE; Uncharacterized protein
STRINGEMJ158680.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.10.0WRKY family protein