PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G244300.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family Trihelix
Protein Properties Length: 451aa    MW: 51358.6 Da    PI: 6.1409
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G244300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix69.75.8e-22122218185
            trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstc 79 
                         +Wt++ v++Li+++  ++++   ++           +kk++W+ vsk m ++g+++sp+qC++k+++lnkryk+++++ +++ +++++++ 
  Prupe.4G244300.1.p 122 KWTDNVVRLLIAIVACVGDDGTLESgeglkrksgilQKKGKWKTVSKIMISKGCHVSPQQCEDKFNDLNKRYKRLNDILGRGtSCRVVENP 212
                         7**************555554432223555666888**********************************************669999999 PP

            trihelix  80 pyfdql 85 
                         ++ d++
  Prupe.4G244300.1.p 213 ALMDSM 218
                         888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.2E-19120245No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MDSSGLGGGF LSGPSGGILD LESSIPRRQE IQLGHPLFAH HQHHMNVMSG VKGDHDPIGL  60
VEVKGSIPKV CSTVVKGKAV APFNANNGYN LSDEDEPSYT DDGGENFEGA KGKKGSPWQR  120
MKWTDNVVRL LIAIVACVGD DGTLESGEGL KRKSGILQKK GKWKTVSKIM ISKGCHVSPQ  180
QCEDKFNDLN KRYKRLNDIL GRGTSCRVVE NPALMDSMPH LSAKAKDDVR KILSSKHLFY  240
KEMCAYHNGQ RIPDCHDLDL QGYSLPLGRC SKDNNGSDEE EAEEHHDTED DELDNEDDND  300
ADNDRERMRR MGDRKKASEE DGHFWPQYVL LDSFEVEMGE IFQDPTKSLW ERRDWIKKQK  360
LQLEEQRVGF QAEALELEKQ RYKWLRYCSK KDRELERLRL ENERMKLENE RKVLQLRQKE  420
LEIDLRRSES SLEPSSLGLG RDQIDLGRHQ *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1304315RERMRRMGDRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.4G244300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020418593.10.0uncharacterized protein LOC18778693
TrEMBLA0A251PQA70.0A0A251PQA7_PRUPE; Uncharacterized protein
STRINGXP_008227154.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105463240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-71sequence-specific DNA binding transcription factors