PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G248900.1.p
Common NamePRUPE_ppa025636mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 703aa    MW: 77012.8 Da    PI: 6.3241
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G248900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.81.6e-07303323526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         +C ++++ GtCk+Gd C +aHg
  Prupe.4G248900.1.p 303 PCLDYRK-GTCKRGDLCEYAHG 323
                         6999***.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.206.5E-1743184IPR020683Ankyrin repeat-containing domain
PfamPF127962.4E-981153IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.59285192IPR020683Ankyrin repeat-containing domain
SMARTSM002480.001985115IPR002110Ankyrin repeat
SuperFamilySSF484031.12E-1585164IPR020683Ankyrin repeat-containing domain
CDDcd002042.31E-1587193No hitNo description
SMARTSM002489.7E-4120152IPR002110Ankyrin repeat
PROSITE profilePS5008811.14120155IPR002110Ankyrin repeat
SMARTSM003567.4E-4298324IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-5303323IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.436303325IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4331362IPR000571Zinc finger, CCCH-type
SMARTSM0035677333356IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
MCGVLEQLSP ESPVPLSSQE TESVNKPMAN PIKVLETEHS SCSLLELAAD NDVDGFKQSI  60
SEASIVNEIG LWYGRDRASR RMVLEHRTPL MVASKYGSVD VVKLILSLSE ADVNCSPCGD  120
KSTALHCAAS GGSENAVDTV KVLLLAGADP NAIDANGCCP FDVIVSPLNC SNLKVVLQEL  180
LQYDGSACQL DLHVSNVCCR SSSPSLSSSP KNASLPSSIP DSTCNSDDIH VSSAPEKKEY  240
PFDPSFPNIK NSIYSTDEFR MFSFKIRPCS RAYSHDWTEC PFVHPGENAR RRDPRKFHYS  300
CMPCLDYRKG TCKRGDLCEY AHGVFECWLH PAQYKTRLCK DGMSCLRQVC FFAHKPEEMR  360
PVYVSTGSAM PSPHSATSSA AFMDMAAALN LLPGSPKAVQ AMLPSPFSPP ISPGNGISDS  420
CMAWPQKNIP SLHLPESNLR ASRLRSSLNA KDIPTEEVNL LHNFELQQQQ PLHDVSSFSQ  480
SYINISSVSR PLHPETLTPS NLNELFSAQV SSPRLTDHLV NSYAFSPSNK PVVRNQLQQQ  540
QTILSPIRTN AFSPRTFEQN LLQAPFDFSS PRMMSHKNIE PLSPIGSRVS ALAQHEKQKL  600
QQLYSFSARD VGSNIHHELG SNGAVGSPVP SLTKWESANG KLDWSVQTDE LGHLTKFRSG  660
EHNVEEPDVS WVQSLVKESP YDVKEVASAP ESGTLLSIDC SN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.4G248900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020417415.10.0zinc finger CCCH domain-containing protein 56
SwissprotQ9LXV40.0C3H56_ARATH; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A251PQI20.0A0A251PQI2_PRUPE; Uncharacterized protein
STRINGEMJ154300.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2044534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12850.10.0CCCH-type zinc finger protein with ARM repeat domain