PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G250800.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 393aa    MW: 42735.4 Da    PI: 7.5818
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G250800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.00027358380123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y+C++C++ F++  +L  H++ H
  Prupe.4G250800.1.p 358 YTCKICKREFPNYNSLGGHMSFH 380
                         9*******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.52E-5357384No hitNo description
PROSITE profilePS5015710.388358385IPR007087Zinc finger, C2H2
PfamPF139122.8E-6358380IPR007087Zinc finger, C2H2
PROSITE patternPS000280360380IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MDGQQDNAIQ PFDEAWFDVA NPCGKEFELP NASSPIHPRW SDKSNNLVFL QDQQLHTPDI  60
LENSYDLETI RPCAGNQVDS CPIMEMGTSI ANFVPVVNPQ EGTSIGNHKV HFPRSTGVLK  120
SEFEGAFPEV NQHVYAPTSA SYSWKGVDIN FPLRNQESHA VNSTNSPSIS STKSLCLKNN  180
PTHAPRFPNT SGFGPSVYIP PSKQLTHFCT SSNAFRLNSD DYIIKDHVCS GFHFTILGLI  240
SSSGSSSSLG SSGCHPVRNQ EIRSSSFTDS PSLQNGLSVR SNQVAYKFGG SANGDINHGL  300
SHLQAVSHGT GITSNVPVPV ENQVETSTQA PRSNCHSSEK NQTFGPSSLK NGRCDVKYTC  360
KICKREFPNY NSLGGHMSFH AKMKKAKRKL DG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.4G250800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020417545.10.0uncharacterized protein LOC109948556 isoform X1
TrEMBLA0A251PS280.0A0A251PS28_PRUPE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2198322