PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G263300.1.p
Common NamePRUPE_ppb019591mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 108aa    MW: 11940.5 Da    PI: 9.8137
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G263300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.48e-067894117
                        --S---SGGGGTS--TT CS
             zf-CCCH  1 yktelCrffartGtCky 17
                        ykt lCr +  +G C+y
  Prupe.4G263300.1.p 78 YKTDLCRSWEDSGSCRY 94
                        9***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.7E-67797IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    Send to blast
MDALKQRCRH LSPLSPLENL MERSQPSIVY RTLVRGVQRK ELLVMDGVSV AGGGRSSRSA  60
YDMSSSSSSS DSSGKILYKT DLCRSWEDSG SCRYTSKVSI REYPLTR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.4G263300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008218882.12e-42PREDICTED: tristetraprolin-like
RefseqXP_008218883.12e-42PREDICTED: tristetraprolin-like
TrEMBLM5WL465e-70M5WL46_PRUPE; Uncharacterized protein
STRINGEMJ144449e-71(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117801416