PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.4G271500.1.p

Common Name

PRUPE_ppa026304mg

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 178aa MW: 19734.3 Da PI: 4.9086

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.4G271500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	69.2	9.3e-22	2	89	14	100
DUF260 14 kdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 ++C++apyf +e+ +f + +FGa++++k+l++lp +er+ + +++ eA+ar dP+yG+++ il+lqqq+++ +a+l++++ + Prupe.4G271500.1.p 2 TGCIFAPYFMHEEaVTDFSSICNVFGANKMSKILSQLPMSERSVTSWTMAVEAHARDIDPIYGCISYILHLQQQVRNIQAQLDEAHVQ 89 57*****9988569****************************************************************999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	15.227	1	90	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.4E-21	2	86	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MTGCIFAPYF MHEEAVTDFS SICNVFGANK MSKILSQLPM SERSVTSWTM AVEAHARDID 60 PIYGCISYIL HLQQQVRNIQ AQLDEAHVQL ARAVAPVANP NQDLENSNEQ SEVANPTEQA 120 AVAKPTEFES LPQFSLTHTN NGDQRCLSPI VFFLVVILDQ PSGQTFQIRK TLHVWTA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-21	1	92	23	113	LOB family transfactor Ramosa2.1
5ly0_B	1e-21	1	92	23	113	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.4G271500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008235796.1	1e-32	PREDICTED: LOB domain-containing protein 29-like
TrEMBL	A0A251PT51	1e-130	A0A251PT51_PRUPE; Uncharacterized protein
STRING	EMJ14595	1e-129	(Prunus persica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42440.1	4e-29	LBD family protein

Link Out ? help Back to Top
Phytozome	Prupe.4G271500.1.p
Entrez Gene	18780849