PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G273800.1.p
Common NamePRUPE_ppa027072mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family NF-YB
Protein Properties Length: 231aa    MW: 25922.5 Da    PI: 6.6766
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G273800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB179.43.3e-5643138297
               NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 
                         +eqdrflPianv+rimkkv+P+n+kiskdaketvqecvsefisfvt+easdkcqrekrkting+d++wa++tlGfedyv+plk+yl+kyre
  Prupe.4G273800.1.p  43 KEQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGEDIIWAITTLGFEDYVHPLKLYLQKYRE 133
                         89***************************************************************************************** PP

               NF-YB  93 legek 97 
                         legek
  Prupe.4G273800.1.p 134 LEGEK 138
                         **996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.8E-5536169IPR009072Histone-fold
SuperFamilySSF471138.25E-4145162IPR009072Histone-fold
PfamPF008082.3E-2848112IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.0E-207694No hitNo description
PROSITE patternPS0068507995IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006152.0E-2095113No hitNo description
PRINTSPR006152.0E-20114132No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MEDERLNGPS GGSPENPCGV KSSASSNNNN GNSTYNNNNN SNKEQDRFLP IANVGRIMKK  60
VIPGNGKISK DAKETVQECV SEFISFVTGE ASDKCQREKR KTINGEDIIW AITTLGFEDY  120
VHPLKLYLQK YRELEGEKLN VPKQQRLEQR QLQQHQQNHH HQQPEQQEQQ TLVSAYDNSV  180
YSSTNLLSQP SFIAAAAADH HQTAFSLPFS PTSIQKQLHP QDHIDSVGHW *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A2e-4641133193NF-YB
4awl_B2e-4641133294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A2e-4641133294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and green siliques. {ECO:0000269|PubMed:11250072}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.4G273800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007214389.11e-173nuclear transcription factor Y subunit B-7
SwissprotQ9SIT97e-73NFYB7_ARATH; Nuclear transcription factor Y subunit B-7
TrEMBLM5X2201e-172M5X220_PRUPE; Uncharacterized protein
STRINGEMJ155881e-172(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132492430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G13570.14e-65nuclear factor Y, subunit B7
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]