PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.5G040400.2.p

Common Name

PRUPE_ppa007828mg

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

NAC

Protein Properties

Length: 284aa MW: 32048 Da PI: 5.9073

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.5G040400.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	99.4	5.3e-31	2	72	57	128
NAM 57 ewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ew+fF+ rd+ky++g+r+nratk+gyWkatgkd++v++ +++++g +ktLvfy+grap g +tdW+mheyrl Prupe.5G040400.2.p 2 EWFFFCARDRKYPNGSRTNRATKAGYWKATGKDRKVVC-QSTVTGYRKTLVFYRGRAPLGDRTDWIMHEYRL 72 8***********************************.9999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	37.745	1	95	IPR003441	NAC domain
SuperFamily	SSF101941	5.36E-35	2	95	IPR003441	NAC domain
Pfam	PF02365	4.7E-15	3	72	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008283	Biological Process	cell proliferation
GO:0071365	Biological Process	cellular response to auxin stimulus
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MEWFFFCARD RKYPNGSRTN RATKAGYWKA TGKDRKVVCQ STVTGYRKTL VFYRGRAPLG 60 DRTDWIMHEY RLSDDLAQGP SGHQGVFALC RVIKKNENAQ KTNDSHGEPK AKRVGSASNS 120 GEDLSSTRIS NEPLNISDDL SSRASYQHNE SHYSSHVTSP YEVNPMAEFD PTSRETNPAD 180 FWVSPDFILD SSKDYPQLQE AMPNYFPQYK SAMASWQSYE NTESPYSSYP NFTGDVTMAD 240 NANQVADMSP FSGHTGYMGY YGNEEMQFEG FDQPSSLRNP TSF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-30	2	101	72	171	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-30	2	101	72	171	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-30	2	101	72	171	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-30	2	101	72	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-29	2	101	75	174	NAC domain-containing protein 19
3swm_B	1e-29	2	101	75	174	NAC domain-containing protein 19
3swm_C	1e-29	2	101	75	174	NAC domain-containing protein 19
3swm_D	1e-29	2	101	75	174	NAC domain-containing protein 19
3swp_A	1e-29	2	101	75	174	NAC domain-containing protein 19
3swp_B	1e-29	2	101	75	174	NAC domain-containing protein 19
3swp_C	1e-29	2	101	75	174	NAC domain-containing protein 19
3swp_D	1e-29	2	101	75	174	NAC domain-containing protein 19
4dul_A	9e-30	2	101	72	171	NAC domain-containing protein 19
4dul_B	9e-30	2	101	72	171	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppe.8515	1e-142	shoot

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269\|PubMed:21911380, ECO:0000269\|PubMed:25182467, ECO:0000269\|PubMed:27986917}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00439	DAP	Transfer from AT4G17980	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.5G040400.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by wounding in the flowering stem. {ECO:0000269\|PubMed:21911380}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM430945	1e-42	AM430945.2 Vitis vinifera contig VV78X241223.4, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020418962.1	0.0	NAC domain-containing protein 86
Swissprot	O49697	2e-59	NAC71_ARATH; NAC domain-containing protein 71
TrEMBL	A0A251P3I4	0.0	A0A251P3I4_PRUPE; Uncharacterized protein
STRING	EMJ10498	0.0	(Prunus persica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17980.1	6e-62	NAC domain containing protein 71

Link Out ? help Back to Top
Phytozome	Prupe.5G040400.2.p
Entrez Gene	18776521

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Asahina M,Satoh S Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues. J. Plant Res., 2015. 128(3): p. 381-8 [PMID:25736731] Matsuoka K, et al. Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls. Plant Cell Physiol., 2016. 57(12): p. 2620-2631 [PMID:27986917]