PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G043700.1.p
Common NamePRUPE_ppb024778mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 148aa    MW: 15290.8 Da    PI: 11.4132
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G043700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.13.1e-08115140530
                         HHHHHHHHHHHHHHHHHHHHCTSCCC CS
                 HLH   5 hnerErrRRdriNsafeeLrellPka 30 
                         hn++Er RR+ri +++  L+el+P+a
  Prupe.5G043700.1.p 115 HNIAERLRRKRIAERMKALQELVPNA 140
                         9************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.78E-7108144No hitNo description
SuperFamilySSF474599.29E-8108142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.655110147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-7114143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-5115140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MALSLGNGDF DRSNNDVVQG SSSFKSPNPV GGEGASSVQT LFNWFSGSLH GGATTQSPNQ  60
HFHQPQGGSL QAQNYGGPGA AMNQGPASGS GGGGGAPAQA RPRVRARRGQ ATDPHNIAER  120
LRRKRIAERM KALQELVPNA NKNQVCS*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.5G043700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007209001.21e-103transcription factor bHLH82
SwissprotQ8S3D55e-25BH069_ARATH; Transcription factor bHLH69
TrEMBLM5WTU41e-102M5WTU4_PRUPE; Uncharacterized protein
STRINGEMJ102001e-102(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.13e-14LJRHL1-like 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]