PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G087600.3.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 379aa    MW: 42741.8 Da    PI: 8.0682
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G087600.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH361.3e-11309355455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h e+Er+RR+++N++f  Lr+++P+       K++ ++ L  Av YI++L+
  Prupe.5G087600.3.p 309 NHVEAERQRREKLNHRFYLLRSVVPNV-----SKMDRSSLLADAVAYINQLK 355
                         799***********************6.....5*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142158.2E-3822212IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474592.62E-16303368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.58E-13303359No hitNo description
PROSITE profilePS5088815.688305354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-9309354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-15309367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-14311360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MEAIISSCSS PNFCQENLGT FQQRLQFIFQ NRPEWWLYWI FWQSSKDSND QVSLSWAAGD  60
FRVNSDLASK RNNKVSNNHQ PKFGFNKKVT SREAEEALFD EDMADLEMRL VDHEDVTESE  120
WFYFYSVSLT QSFAAGHATN NILGRAFCSG GFVWLAGAHE LQFYECERVK EARMHGIQTL  180
VCIATPCGVL ELASLDVIKE DWGFVHLSKS LFGSDNNNNN NRVSQQKGSR EGNVLAPLLA  240
NGIFSGSQKE LTRQAGTKEA APFNIGGSSP ESLSGSVGNF TCENTGNTRS KKRRRSSNNG  300
ASRESSLLNH VEAERQRREK LNHRFYLLRS VVPNVSKMDR SSLLADAVAY INQLKAKVEE  360
LELKTQAQPQ NPKKWKWM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A5e-23152123192Transcription factor MYC3
4rqw_B5e-23152123192Transcription factor MYC3
4rs9_A5e-23152123192Transcription factor MYC3
4yz6_A5e-23152123192Transcription factor MYC3
5gnj_A4e-23308368772Transcription factor MYC2
5gnj_B4e-23308368772Transcription factor MYC2
5gnj_E4e-23308368772Transcription factor MYC2
5gnj_F4e-23308368772Transcription factor MYC2
5gnj_G4e-23308368772Transcription factor MYC2
5gnj_I4e-23308368772Transcription factor MYC2
5gnj_M4e-23308368772Transcription factor MYC2
5gnj_N4e-23308368772Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.5G087600.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020419035.10.0transcription factor bHLH14 isoform X2
TrEMBLA0A251P5L60.0A0A251P5L6_PRUPE; Uncharacterized protein
STRINGXP_008238754.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.11e-43bHLH family protein