PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G089900.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 231aa    MW: 25521.9 Da    PI: 7.9305
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G089900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.81e-164899155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                        + y+GVr++  +++Wv+e+r p   + k+  ++lg++ tae+Aa+a++ a+++++g
  Prupe.5G089900.1.p 48 PVYRGVRRRD-NNKWVCELRQP---NkKKSGIWLGTYPTAEMAARAHDVAALAFKG 99
                        68*****998.8******9998...5477**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.7E-134899IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-2049108IPR016177DNA-binding domain
PROSITE profilePS5103221.39149107IPR001471AP2/ERF domain
SMARTSM003802.2E-2449113IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-2849109IPR001471AP2/ERF domain
CDDcd000184.60E-2550109No hitNo description
PRINTSPR003671.2E-65061IPR001471AP2/ERF domain
PRINTSPR003671.2E-67389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
VSDSADQPRS SSSSDASVST LRTSDVILAS SSPKKRAGRK VFKETRHPVY RGVRRRDNNK  60
WVCELRQPNK KKSGIWLGTY PTAEMAARAH DVAALAFKGK LACLNFADSG WRLPVAASMD  120
SMDIQRAAAE AAEGFRPVEF GGVSSGSSDE KERMVVVEEK KKKQAIVDMG KSCSRLNLFY  180
LDEEEMFDMP RLIDNMAEGL LLSPPQCLAG YLNWDDMETE ADSKLWSFSI *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.5G089900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX4646670.0JX464667.1 Prunus ferganensis cultivar Kashi2 C-repeat binding factor (CBF) gene, complete cds.
GenBankJX4646680.0JX464668.1 Prunus persica cultivar Shanghaishuimi C-repeat binding factor (CBF) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007209842.21e-170dehydration-responsive element-binding protein 1A
SwissprotQ9FJ934e-61DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLK4HQP71e-169K4HQP7_9ROSA; C-repeat binding factor
TrEMBLK4HX411e-169K4HX41_PRUPE; C-repeat binding factor
TrEMBLM5WCL41e-169M5WCL4_PRUPE; Uncharacterized protein (Fragment)
STRINGEMJ110411e-170(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.17e-61C-repeat-binding factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  3. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  4. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]