PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G090100.1.p
Common NamePRUPE_ppa010800mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 237aa    MW: 26352.7 Da    PI: 4.9388
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G090100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.21.7e-1757108155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         + y+GVr++  + +Wv+e r+p   + k+ r++lg++ tae+Aa+a++ a+++++g
  Prupe.5G090100.1.p  57 PVYRGVRRRN-NDKWVCEMREP---NkKKSRIWLGTYPTAEMAARAHDVAALAFRG 108
                         68*****887.8******9998...5477************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.5E-1357108IPR001471AP2/ERF domain
PROSITE profilePS5103222.40558116IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-3058118IPR001471AP2/ERF domain
SMARTSM003807.1E-2858122IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-2158118IPR016177DNA-binding domain
PRINTSPR003671.3E-75970IPR001471AP2/ERF domain
CDDcd000187.65E-2959118No hitNo description
PRINTSPR003671.3E-78298IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MDLSQLSDPV DQPESSSLSD ASVTTQGPSW SDGDVILASS LPKKRAGRRV FKETRHPVYR  60
GVRRRNNDKW VCEMREPNKK KSRIWLGTYP TAEMAARAHD VAALAFRGKL ACINFADSAW  120
RLPLPASMDT MDIRRAAAEA AERFRPAEFG GMCSGSSDEK ERMVVQVEEE DKKGSVNLER  180
SLSLSCWDEE EAFDMPRLLH DMAEGLLLSP PQPLGSDMNL DDMGTDADIK LWSFSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1345115371Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.5G090100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC5434990.0KC543499.1 Prunus persica CBF/DREB 3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007209547.11e-174dehydration-responsive element-binding protein 1E
SwissprotQ9LN863e-60DRE1F_ARATH; Dehydration-responsive element-binding protein 1F
TrEMBLM5WBR41e-172M5WBR4_PRUPE; CBF/DREB 3
STRINGEMJ107461e-173(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25480.16e-54dehydration response element B1A
Publications ? help Back to Top
  1. Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y
    Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology.
    Plant Signal Behav, 2014. 9(3): p. e28211
    [PMID:24614501]
  2. Kazama D, et al.
    Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis.
    Plants (Basel), 2013. 2(4): p. 769-85
    [PMID:27137403]
  3. Song GQ,Gao X
    Transcriptomic changes reveal gene networks responding to the overexpression of a blueberry DWARF AND DELAYED FLOWERING 1 gene in transgenic blueberry plants.
    BMC Plant Biol., 2017. 17(1): p. 106
    [PMID:28629320]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]