PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G100700.3.p
Common NamePRUPE_ppa002762mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 458aa    MW: 51070.7 Da    PI: 6.248
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G100700.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.37.6e-15258304455
                         HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         +h   ErrRR+++N++f  L++++P+ +      K +K++iL  A+eY+k+L+
  Prupe.5G100700.3.p 258 NHALSERRRREKLNERFCVLKSMVPSiS------KDDKVSILDDAIEYLKDLE 304
                         7999**********************66......****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.514254303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.2E-18256315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.57E-14257308No hitNo description
Gene3DG3DSA:4.10.280.105.3E-18258315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-12258304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-13260309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MEDPDLIQHV KTSFLEVPYP IASKKTNPSV GSTRNDNDLA CTVLDHDVMD AKLIPVVGCE  60
EMNATSPNNS SNGLGLNQPA DDSFMVEGMN GGASQVQSWQ FMDDEFSNFV HHSMDSSDCI  120
SQTLVYPEKV PLGPKAEKAS DHCLHDLKER NSTKLTSLGP QGTDLQYQSV LSALLKGSHQ  180
LILGPNFQNC HQESNFVSWK RGGFVKCRKQ RGGSPQKLLK QILFEVPRMH VDCVLESPED  240
NSNRNGVWRP EADEIGMNHA LSERRRREKL NERFCVLKSM VPSISKDDKV SILDDAIEYL  300
KDLEKRVEEL ESCREPSDLE AKIKRKIQDT IERTSDNCCN TKISNGKKPL VYKRKASDID  360
ETEPEISYVV SKHGSSDNIT VNMNKKDVLI EMKFPWREGV LLEIMDATSR LQLDTHSVQS  420
STADGILSVT IKSRFKGSTV ASAGTIQQAL QRIARSC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1262267ERRRRE
2263268RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.5G100700.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6894040.0KP689404.1 Prunus pseudocerasus isolate Unigene15653 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020420271.10.0transcription factor EGL1
TrEMBLA0A251P9S80.0A0A251P9S8_PRUPE; Uncharacterized protein
STRINGEMJ102390.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-113bHLH family protein