PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.5G126800.1.p

Common Name

PRUPE_ppa008843mg

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

Dof

Protein Properties

Length: 318aa MW: 34615.2 Da PI: 8.9882

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.5G126800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.2	1e-39	43	104	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 ke+al+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrn+PvGgg+rknk+sss Prupe.5G126800.1.p 43 KEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRSSS 104 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-27	35	95	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.7E-33	45	101	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.134	47	101	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	49	85	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MDTAQWPQGI VVKPIEEIVT NTCPKPAAAA AVNNLERKAR PQKEQALNCP RCNSTNTKFC 60 YYNNYSLTQP RYFCKTCRRY WTEGGSLRNI PVGGGSRKNK RSSSSSAAAN SSTTTSSTSS 120 ASKRLPDLIQ PQNPKINQGQ DLNLTFPATN QDFRNIISDH LVHHHQQHHQ LPNNNNMENS 180 NKQNHINISA SSPSSTTTTT TSHLSALELL TGLTSRGLNS FMPMPVPDPN NNNNNNTVYS 240 TTSGFPMQDF KPTLNFSLDG LGSGYGSLQG VQESSGRLLF PFEDLKQVSS TGGGIEQNKE 300 HGDSTGYWTG MLGGGSW*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppe.2501	0.0	fruit

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed at preprocambial stages first in wide domains, and later confined to sites of vein development. {ECO:0000269\|PubMed:20563990}.
Uniprot	TISSUE SPECIFICITY: Accumulates in the stele. {ECO:0000269\|PubMed:20563990}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.5G126800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT202286	0.0	KT202286.1 Prunus dulcis dof zinc finger protein (dof) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007211201.1	0.0	dof zinc finger protein DOF4.6
Swissprot	Q8LAP8	9e-68	DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBL	M5X013	0.0	M5X013_PRUPE; Uncharacterized protein
STRING	EMJ12400	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF674	34	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	8e-50	Dof family protein

Link Out ? help Back to Top
Phytozome	Prupe.5G126800.1.p
Entrez Gene	18777159

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]